Table 1. Property of the newly identified groundnut SSRs.


Sequence ID

Repeat
motifs

Type

Primer ID

Primer sequence
(Foward)

Primer sequence
(Reverse)

CTW-06

(ct)27

perfect

S-01

TGGACTAGACAAGGAACAACCA

GAGCCATGAGCACACAACAC

CTW-06

(ct)4

perfect

 

 

 

CTW-07

(gaa)5

perfect

S-02

TTGTTGCTATTTAGGGTGATTGA

GTGGGACAAGGCTTTGTTGT

CTW-07

(gaa)5

perfect

 

 

 

CTW-07

(aac)5

perfect

 

 

 

CTW-10

(tct)5

perfect

S-03

GCACCAATTTTGTCCCTGAT

AAGGGGTTTGCACGTAAATG

CTW-11

(ca)10(ct)8

compound

S-04

GAACGCCAGTTTACGTCGTC

TTGGGACACTTACCGAAGAGTT

CTW-11

(ct)4

perfect

 

 

 

CTW-13

(ac)53

perfect

S-05

CCGGCTAGAGAATACACACACA

CCGGCTAGAGAATACACACACA

CTW-13

(ca)4

perfect

 

 

 

CTW-13

(ca)4

perfect

 

 

 

CTW-14

(ac)84

perfect

S-06

CCGGCTAGAGAATACACACACA

TCCTCCTTCCTCCTTGAACA

CTW-15

(tct)5

perfect

S-07

GCACCAATTTTGTCCCTGAT

CAGAAGGGGTTTGCACCTAA

CTW-16

(ac)12

perfect

S-08

AAGTCCAAAATGCATGCTCA

GGCTCTGTGTGGTAGGGTGT

CTW-18

(ag)5

perfect

S-09

CGCTGTCCTTATCGAACCAT

CTCTCACTCGCGCTTTCTCT

CTW-18

(ca)4

perfect

 

 

 

CTW-18

(ga)4

perfect

 

 

 

CTW-18

(ga)4

perfect

 

 

 

CTW-19

(gt)32

perfect

S-10

CAAGCCAAAAGTGGAAAACC

TCCTTTTGCTAATGCGGTCT

CTW-19

(gt)4

perfect

 

 

 

CTW-19

(ct)5

perfect

 

 

 

CTW-20

(ct)4tt(ct)9

imperfect

S-11

ATGACGGCAGTAGCAGAAGC

TTGAGGAGAAGACGCTGTTG

CTW-20

(tc)4

perfect

 

 

 

CTW-20

(ct)4

perfect

 

 

 

CTW-21

(caa)3cca(caa)2

imperfect

S-12

TCATTGACCTAGCCGAATCC

GAGGGACCAATTGTTGGTTG

CTW-23

(aac)5

perfect

S-13

TTGTTGCTATTTAGGGTGATTGA

CGTCGTTTGATTCATGTAGCC

CTW-23

(gaa)5

perfect

 

 

 

CTW-23

(gaa)5

perfect

 

 

 

CTW-25

(ca)12

perfect

S-14

AGGCAAACCACTGCAAGAGT

CGCTTCCCTGGGATACTTAG

CTW-26

(ctt)5

perfect

S-15

TGAACGAAAAATGCTAATGTGG

CGCAGAGACGTGTTGAAGAA

CTW-26

(ctt)5

perfect

 

 

 

CTW-26

(ctt)4

perfect

 

 

 

CTW-28

(tc)9

perfect

S-16

TGGTAGTGGAGTCAGAGTGTGTG

GTTGCATTGCCCAACTCTTT

CTW-28

(gt)4

perfect

 

 

 

CTW-29

(ct)16

perfect

S-17

CATTGGAAAGATCCGACGAT

GTTGCAACAACGACGATGG

CTW-29

(ct)4

perfect

 

 

 

CTW-31

(ct)5

perfect

S-18

CAATAAATTCGTCGTAT

GAGAGAAGAGAAGGTTAGAGA

CTW-33

(ct)24

perfect

S-19

GCTCCACTAGTGCCGAAATC

CAGACACCCGGAGGCTTA

CTW-36

(caa)5

perfect

S-20

CACGAACAGCCACTCAAAGA

CTCTGGGGGACTAGCTGTTG

CTW-39

(ct)15

perfect

S-21

AGTCCTACTTGTGGGGGTTG

TCCCTTTTGCAGTGAAATCC

CTW-41

(ac)8(at)5

compound

S-22

CGTGACAAACATGTGCTGCT

TTTTGGAATCTGTTTATGGGAAA

CTW-51

(tgt)4

perfect

S-23

CTGGAAGTGGTCCTGTTGGT

GCTGCTCCTGTCTCTGGAAT

CTW-52

(ga)22

perfect

S-24

GGCAATGCACACGCTACTCT

CGTGAGGCGTGAGAGTTCAT

CTW-54

(aga)7

perfect

S-25

GCTATGCTTTTACCACACCAAA

CCATTCATGGTCATCCCTTC

CTW-54

(ag)4

perfect

 

 

 

CTW-56

(aac)4

perfect

S-26

ACATGAGTGCCCAACTAGCC

TGCAGAGCTTCAACAACCAC

CTW-66

(ca)4

perfect

S-27

ATCCGGCTCACAGTTCAATC

GCCAAGGCTGAAAAGAGTTG

CTW-68

(ttg)4

perfect

S-28

TTGCAAGATGTGCATCAAAA

TGACAAACCAACAAACGACA

CTW-68

(gt)4

perfect

 

 

 

CTW NEW_67

(ttc)15

Perfect

S-29

CACCGCCGCCCGTTTCTTCTCCT

GGGCAACGGCTCGACGGTGGTATC

CTW NEW_67

(cct)5

perfect

S-30

CTTCTTCTTCTTCCCGCCACC

GGCGGGCGACGGGCAAC

CTW NEW_124

(tc)3tt(tc)10tt(tc)4

imperfect

S-31

GGCGGCGATGTAGAACCCTCCAGTAG

ACCGCCATCGCCATCGTTGTTGT

CTW NEW_174

(ct)2cc(ct)19

imperfect

S-32

GCATTCGCGCAGCAACC

CCAGAGTAGAGCGGCAGTCC

CTW NEW_270

(caa)4

perfect

S-33

AGATCGCCGCCCTTACCAAAACCT

AGAAAGCCCCAAAATCGTGAGTAACAT

CTW NEW_263

(tgt)4

perfect

S-34

ACCTTCTTCCGCGCTTGTTTCAG

TCCCAGCTCCGATCCTCATACTTCA

CTW NEW_74

(ga)5

perfect

S-35

GCGGTTGCCTGGGTCGTC

CCGCAATGGAAGTGGGAAAGTAT

CTW NEW_227

(tct)6

perfect

S-36

GGCAACGCGTGGTAGCAGTG

GAGTGAGTGAACCAGAAGGAAGGA

CTW NEW_33

(gt)8

perfect

S-37

GACCGCGGCTCCACTTCTTTCTCT

ACATTCCCCTTTCACCCCTCACAAC

CTW NEW_51

(ga)17

perfect

S-38

GGCAGCGAAGCACCCATTGTTA

GTAGGGTTGCGTTTCGTTTTCTTATCG

CTW NEW_72

(aca)4

perfect

S-39

TCCAAAATCAACCAGAAAGCAGAAGCAGATG

AGGAAGAGAAGCGGAGAGGGAGAGAAG

CTW NEW_204

(ca)7

perfect

S-40

ACCCAACACTAGCCGCCACTGA

GCAACGCCTCCTCCTCTTCCTCTA

CTW NEW_16

(aac)4

perfect

S-41

AGAGTATGCGGAATTTGTGCTGAT

CCCGTTGTTGGTTGTGATGG

CTW NEW_209

(caa)4

perfect

S-42

GAGGGGGCGAACGTTGGACTTG

GCCGGAGCACTTGAGCATTTTT

CTW NEW_7

(aga)6

perfect

S-43

ATTCTTTGGACTCGGGTTCATACTTTG

ACACCATCCCTCACTCTCCTCCATA

CTW NEW_197

(tg)17(ag)17

compound

S-44

GGTGTTGAGGGATGGTTGTTCTAA

CTTTCCCGCCTCTCCCTCTC

CTW NEW_62

(tga)5

perfect

S-45

AGGTGTTGTGGCATTGTTCTTCAT

CGGCGGTAGCGGTAGCGGTTAT

CTW NEW_77

(gaa)8

perfect

S-46

ATGGCGAATCGGAGGGTAGGTT

TCCAATCGTGCGTTTCAATCATCT

CTW NEW_19

(gtt)5

perfect

S-47

ATTCTGAGGCTGCTTCCCAAACT

CTGCCATGTAAGCCGTGAATAAG

CTW NEW_86

(gtt)5

perfect

S-48

ATTCTGAGGCTGCTTCCCAAACT

CTGCCATGTAAGCCGTGAATAAG

CTW NEW_36

(gt)11(ga)7ggaggaa(ga)6

compound

S-49

GGCAGCGAAGCACCCATTGT

CGTTTCGTTTTCTTATCGCACTTC

CTW NEW_241

(aac)4

perfect

S-50

ATGCACGCAACTACAGGAAGATAAC

TGCGCAAGAGAACGGAACAT

CTW NEW_71

(tc)7

perfect

S-51

CCCAATTCGCATAAAAACAGAGAC

CGAGCCGCAATCCAACACT

CTW NEW_74

(ga)5

perfect

S-52

CCCTGAGAATGAAAGAAAGAAACA

CAACCGCAGCGACGATAGATG

CTW NEW_92

(tct)6

perfect

S-53

CACACCCATCCATCTCCTCCATA

TGTCTTTGTTGCTCCTCCCTCATT

CTW NEW_234

(ca)5(ga)35

compound

S-54

GTGTGCCATGTAGGTGTGACTG

GTTTGCCCTCTTGTTTTCTCC

CTW NEW_37

(ag)5

perfect

S-55

ACCCCCAACTGCACTACTATTCATTTT

CGACGCGGCGAGGCTTCC

CTW NEW_202

(tc)16

perfect

S-56

CATAGGCGTCCCATTGCTTACAG

GATTACGCGCTCTTTCATTTG

CTW NEW_252

(ttg)9

perfect

S-57

AGGGCGAAAGGCAGAGGAAGA

AAAGGGGTGAGACAGCCAATAACAT

CTW NEW_231

(tc)5

perfect

S-58

GAGCGAAAGAGAACGAGACAACAA

TCGGGGAGGATCAACCAAATAG

CTW NEW_62

(gtt)4

perfect

S-59

TTGGTGGAAGCCCTAGAGTGAGTGAA

ATGGAAATGAAGCCGATAAGAGA

CTW NEW_92

(tc)5

perfect

S-60

TTGGTGCAGGGATGTAAATG

ATATGGAGGAGATGGATGGGTGTG

CTW NEW_137

(aac)4

perfect

S-61

GAGGAGGCAGAGATAATCAGG

GAGAGGTCTGCTGTTGGGTAT

CTW NEW_166

(tg)6

perfect

S-62

CAAGTGGGGGGTTTATGGTG

CCCCCTCCATCACCCCT

CTW NEW_200

(ag)13a(ag)2

imperfect

S-63

CACCGTGGTATGATCGTTTCTTTT

GTTCGCGTGGGATTGTTTGTGT

CTW NEW_51

(gt)11(ga)7gtgagga(ag)6

compound

S-64

GGCAGCGAAGCACCCATTGT

TCCTTCGACCCTATCTATCAGTATCAC

CTW NEW_67

(ctt)9

perfect

S-65

CGATACCACCGTCGAGC

CAAGAACCCAGAATCAGGAAG

CTW NEW_130

(tg)15

perfect

S-66

ACCCCCATTGAGCGATTTG

AGTCCCATTGCCTTTCTTCTGTAT

CTW NEW_157

(aac)6

perfect

S-67

TCTCCTTCCCGAACAACCCTATTA

ATTGTTGACTTGGCTTCGTTCCTA

CTW NEW_137

(aac)6

perfect

S-68

AATCAAGGTGGCAACTACAGC

AGACACTATACTTGCAACGAGGAT

CTW NEW_17

(ttc)4

perfect

S-69

GGGGAGTCGTGTCAAGCCATTA

ACCCCAAACCCAACCCTCAC

CTW NEW_43

(ttg)5

perfect

S-70

CCTTTCCCATTCCATTAGC

GTCCGAGTTGAGGAACAACAA

CTW NEW_88

(tct)7

perfect

S-71

ACCTCTTTCCCTCTCCTCCATA

TTCCTTGCCTCTGTTGTTTGAT

CTW NEW_139

(ag)6

perfect

S-72

TACAGCCCAAATGGAATGAGAA

GAGTTGGGAAGAAAGGATGAAGAT

CTW NEW_68

(aag)8

perfect

S-73

AGTCCACTGAACCGAACACCAATC

TCCCTACCACCGAACGAAACAAT

CTW NEW_20

(aac)9

perfect

S-74

GCACGCGCTCAGGACAAAT

AGGGCGAAAGGCAGAGGAA

CTW NEW_249

(ttc)4

perfect

S-75

ACACCCTCCTCAACATCAAAT

ATACCCAAGCGAAACAAGAATC

CTW NEW_36

(ga)18

perfect

S-76

ATACTGATAGATAGGGTCGAAGGAGAG

CAACGAAAGAAAAATAAGGACATAGTG

CTW NEW_194

(ct)9

perfect

S-77

CACCCCTCACTACAAGAAAAATAC

ATGGCGGAGAAGAGGGAGGAG

CTW NEW_199

(caa)6taa(caa)4

Imperfect

S-78

TCCAATTCAATCTCACTAAAAACT

CAAAGGGGAGCACGAACATAAG

CTW NEW_193

(ttc)5

perfect

S-79

AAACCACGCAGTCCGAATACA

CTTGATGGGCTTTGGAGATAA

CTW NEW_202

(tct)6

perfect

S-80

GGCGTCCCATTGCTTAC

AGAATGCGTTGATGTTATGAA

CTW NEW_119

(tc)26

perfect

S-81

GCTTCAGTGGTGGGCTCAT

TATCATAGTAAAAAGGTGGGAACAAT

CTW NEW_219

(tgt)4

perfect

S-82

TTGCAAAGTAGCGTTCAGAC

CATGGATGGCAGGACAAT

CTW NEW_271

(ca)15ta(ca)11

Imperfect

S-83

CTTGAACTTATTTTTGGTGGGTGAAC

CAAGGGAGAATGAAGAATGCTAAG

CTW NEW_274

(ga)9

perfect

S-84

CAGCCAATATGTCACAACCCTAAT

CTCCCACTACAAATCTCCAATCAAT

CTW NEW_178

(ct)12cc(ct)14

Imperfect

S-85

AAACTATCACCGACAAAAA

AGAGACATAAGCCGAGAGG

CTW NEW_32

(ttc)14

perfect

S-86

TCCATGAGGGGTTATAGGTGTTT

GGGTGTATTTCTGAAGTTCCATTATC

CTW NEW_67

(ggt)8

perfect

S-87

TCTGAGTTCTGGCTTTTGAT

CACCACCACCATCATCATCAT

CTW NEW_128

(ag)43

perfect

S-88

TCAAAGAAGCAATAAAAATC

CTCCACCGGCAAGCACCTC

CTW NEW_82

(ct)19

perfect

S-89

ATCTATGGCCGGGTTGGTT

AGGTGGTGGGTAGTGCTTCTG

CTW NEW_231

(ttc)11

perfect

S-90

GAGAGCGAAAGAGAACGAGAC

GAATTGGAATCCATAGCCAT

CTW NEW_162

(ttc)8(tcc)2(ttc)4

compound

S-91

TGAGGGCAGGGGAAGAT

CGTCGGTGGTTGAAGCAGAG

CTW NEW_219

(tgt)4

perfect

S-92

ATTGGCAGATGAAGAAGGA

GGGAAATCAGAGGTGGAATAA

CTW NEW_38

(tg)10(ag)14

compound

S-93

TTGGGGAAATACAGAATAACG

CTCCCACATCCCCACCAT

CTW NEW_185

(ag)25

perfect

S-94

TTCCCAAAAATAGTCAACCA

TCTTCCTCTGCCTTTCATCCA

CTW NEW_40

(ca)5

perfect

S-95

AACCCCAACCATCAAACAAACA

ATGGTATCACTGGGAAATG

CTW NEW_193

(tct)4

perfect

S-96

ATACACATTCCTCTCCATCTCCT

TTTTTCTTCCCTTTCTTCTTTCTA

CTW NEW_206

(ttg)13

perfect

S-97

GAATCGCGTCTCAGGTG

TATTGCTTACGATTATTTTGT

CTW NEW_225

(Ac)7

perfect

S-98

TTAATGAACCCAAATACACA

AGCCAAAACCCTAAAAACTA

CTW NEW_162

(ttc)7

perfect

S-99

GGGCAGGGGAAGATCAATA

ATGAGGGTGAATTGGAATTGG

CTW NEW_74

(ac)5

perfect

S-100

AAGCGCCATATGTGTTTGA

CCCGTCTTGGCTTTCTTCT

CTW NEW_220

(tca)4

perfect

S-101

AGTGCGTTTGGCTCATCA

ATTTCGTTCATTTAGTCCATAGA

CTW NEW_67

(tga)5

perfect

S-102

TCCTGATTCTGGGTTCTTGA

CCATCCACTGCCACTCCAT

CTW NEW_152

(gt)14

perfect

S-103

ATGTGGGAATTATGGGTAGC

ATGGCGTGACAAAAGAATC

CTW NEW_253

(ttg)8

perfect

S-104

GAATCGCGTCTCAGGTGGTTT

TTAGATGAGTATGAAGAGATTAT

CTW NEW_211

(ag)9

perfect

S-105

AAGCTCATTTCATCACAA

CCACAAACGGCTCATCAATC

CTW NEW_78

(gaa)11

perfect

S-106

GCCAGCATAGAAGCATAATAACA

GAGTAATAGTGAATCAATGAGAAGAGG

CTW NEW_277

(gaa)6

perfect

S-107

TTCAATAATCCAAACCTCATCA

CTGTTTGCGTTTTTCTACTCTG

CTW NEW_177

(tc)14(ac)15

compound

S-108

GCTTACATTACACGTCATCTC

CCGAACTTACAGTTAGGAG

CTW NEW_27

(ag)21

perfect

S-109

AAGGGAGCACAATCATA

GAGCACGAGTTCATACAC

CTW NEW_9

(aac)37

perfect

S-110

TTCTAGTAGTAAAAATAAAAACAC

GTCAAAGGGAGGCACGAACATAAGT

CTW NEW_136

(gt)20

perfect

S-111

TGAAAATTAAAACTACCAACTACA

TGCCCCAAGATAACACAAT

CTW NEW_254

(atg)4

perfect

S-112

ACTGCTAGCGTTGTTTTCTTCC

CATTACACCTTCACCAACACCA

CTW NEW_78

(tc)9

perfect

S-113

TTGCATGTAGGAAAGAAAGATT

TTGGATGTGGTGGTGATGT

CTW NEW_133

(ct)12

perfect

S-114

AAGAGACGAAAGTGAGTTAGC

GGGAGCATGTTTAGGGAGAC

CTW NEW_182

(cca)5

perfect

S-115

GGTAATATGCCTTGGTGAC

TTCTTGATAATTCTGTGGAT

CTW NEW_217

(ttc)4

perfect

S-116

GATTTGTTTTCTTCTTCGTTTTT

CATAATCCACTTCGCCCTAAT

CTW NEW_266

(ttg)8

perfect

S-117

GGATAAAATAAGGAATGA

TTGCAAGTAAGTAATACAA

CTW NEW_78

(aat)6

perfect

S-118

TATATGATGCTTGATTGAGACT

CATGTAGAAGGCTTGGAGGGTAT

CTW NEW_217

(ttc)4

perfect

S-119

CTTCTTCGTTCTTCTTCC

ACGCGTTAGTCTCACAGTCA

CTW NEW_35

(tc)25

perfect

S-120

TTCAAACTACATCTCAAACTAT

TGTGCCAGGACCCAAAAT

CTW NEW_8

(aca)4

perfect

S-121

TTCTCAAAGTCTGTCTGG

TTTAGCAATTGGTTCTTA

CTW NEW_32

(gaa)4

perfect

S-122

TTTTTCGATTTTCATGGTTTCTG

TTTCTCTTTCTCCTCATCTTCTGC

CTW NEW_12

(ct)11

perfect

S-123

GTATGGTGACTGTAGTTCTC

AGTGACCAAAATAGAAGC

CTW NEW_103

(tg)12

perfect

 

 

 

CTW NEW_104

(tgt)15

perfect

 

 

 

CTW NEW_12

(cgc)4

perfect

 

 

 

CTW NEW_171

(aac)6

perfect

 

 

 

CTW NEW_184

(tc)24

perfect

 

 

 

CTW NEW_190

(ttg)7

perfect

 

 

 

CTW NEW_194

(tc)8

perfect

 

 

 

CTW NEW_215

(gga)4

perfect

 

 

 

CTW NEW_222

(ct)24

perfect

 

 

 

CTW NEW_223

(tg)35

perfect

 

 

 

CTW NEW_227

(ct)21

perfect

 

 

 

CTW NEW_23

(ca)28

perfect

 

 

 

CTW NEW_257

(tg)26

perfect

 

 

 

CTW NEW_259

(tg)11(ag)13tg(ag)10

compound

 

 

 

CTW NEW_277

(gaa)4gga
(gaa)gag
(gaa)6cgc
(gaa)taga
(gaa)40

imperfect

  

 

 

CTW NEW_52

(tg)51

perfect

 

 

 

CTW NEW_58

(ct)31

perfect

 

 

 

CTW NEW_67

(tga)4(tgg)7

compound

 

 

 

CTW NEW_68

(agg)4

perfect

 

 

 

CTW NEW_85

(tg)7

perfect

 

 

 

CTW NEW_97

(tc)13

perfect

 

 

 

CTW NEW_98

(tg)12

perfect

 

  

  

  

Supported by UNESCO / MIRCEN network