Table 2. Similarities of the 16S rDNA sequences from clones, arranged into groups according to ARDRA patterns, to sequences retrieved from databases (frequency of the colonies listed in this table is >2.4%). |
clones |
Amount |
Frequency |
Closest relative (accession no.) |
Similarity |
Phylogenetic group |
JYC-1A |
6 |
4.7 |
Gamma proteobacterium WJ2 (AY096032.1) |
98 |
γ-Proteobacteria |
JYC-1B |
59 |
46.1 |
Acidithiobacillus ferrooxidans (DQ355183.1) |
99 |
γ-Proteobacteria |
JYC-1C |
4 |
3.1 |
Acidobacteriaceae isolate WJ7 (AY096034.1) |
98 |
Acidobacteriales |
JYC-1D |
30 |
23.4 |
Acidithiobacillus ferrooxidans (DQ355183.1) |
100 |
γ-Proteobacteria |
JYC-1H |
5 |
3.9 |
Acidithiobacillus albertensis (AJ459804.1) |
100 |
γ-Proteobacteria |
JYC-1J |
3 |
2.4 |
Alicyclobacillus sp. AGC-2 (AF450135.1) |
99 |
Firmicutes |
JYC-1M |
12 |
9.4 |
Acidiphilium sp. XTS-1(DQ168464.1) |
99 |
α-Proteobacteria |
JYC-2A |
3 |
2.4 |
Uncultured bacterium clone p-5142-2Wb3 (AF371935.1) |
99 |
α-Proteobacteria |
JYC-2B |
16 |
12.5 |
Pseudomonas reatans (AY747594.1) |
99 |
γ-Proteobacteria |
JYC-2C |
53 |
41.4 |
Caulobacter crescentus CB15 (AE006011.1) |
99 |
α-Proteobacteria |
JYC-2D |
16 |
12.5 |
Brevundimonas nasdae (AB071954.2) |
99 |
α-Proteobacteria |
JYC-2J |
5 |
3.9 |
Sphingomonas sp. strain A28241 (AJ001051.1) |
97 |
α-Proteobacteria |
JYC-2L |
5 |
3.9 |
Desulfotomaculum auripigmentum (AJ493051.1) |
96 |
Firmicutes |
JYC-2Q |
6 |
4.7 |
Shigella flexneri 2a str. 2457T (AE014073.1) |
99 |
γ-Proteobacteria |
JYC-3A |
10 |
7.8 |
Pseudomonas agarici (D84005.1 ) |
88 |
α-Proteobacteria |
JYC-3B |
47 |
36.7 |
Caulobacter crescentus CB15 (AE006011.1) |
99 |
α-Proteobacteria |
JYC-3D |
18 |
14.0 |
Pseudomonas reactans (AY747594.1) |
99 |
γ-Proteobacteria |
JYC-3E |
7 |
5.5 |
Candidatus Chryseobacterium (AF531766.1) |
99 |
Acidobacteriales |
JYC-3F |
7 |
5.5 |
Brevundimonas nasdae (AB071954.2) |
99 |
α-Proteobacteria |
JYC-3J |
7 |
5.5 |
Uncultured Aquabacterium sp. clone YJQ-2 (AY569280.1) |
99 |
β-Proteobacteria |
JYC-3P |
3 |
2.4 |
Azospirillum sp. DA6-2-2 (AY118223.1) |
98 |
α-Proteobacteria |
|