Molecular Biology and Genetics
 

Biotechnology Industry

Electronic Journal of Biotechnology ISSN: 0717-3458 Vol. 11 No. 2, Issue of April 15, 2008
© 2008 by Pontificia Universidad Católica de Valparaíso -- Chile Received August 20, 2007 / Accepted Deember 6, 2007
DOI: 10.2225/vol11-issue2-fulltext-10
TECHNICAL NOTE

Universal protocol for generating 100bp size standard for endless usage

Chandrasekhar Natarajan
Human Molecular Genetics Laboratory
Rajiv Gandhi Centre for Biotechnology
Poojapura, Thiruvananthapuram
Kerala, India-695014
Tel: 91 471 2345899/2348753
Fax: 91 471 2348096
E-mail: chandrurgcb@yahoo.com

Neetha N. Vijayan
Human Molecular Genetics Laboratory
Rajiv Gandhi Centre for Biotechnology
Poojapura, Thiruvananthapuram
Kerala, India-695014
Tel: 91 471 2345899/2348753
Fax: 91 471 2348096
E-mail: neethav@yahoo.com 

Linda Koshy Vaidyan
Human Molecular Genetics Laboratory
Rajiv Gandhi Centre for Biotechnology
Poojapura, Thiruvananthapuram
Kerala, India-695014
Tel: 91 471 2345899/2348753
Fax: 91 471 2348096
E-mail: lindakoshy@yahoo.co.in 

Anila Mathew
Human Molecular Genetics Laboratory
Rajiv Gandhi Centre for Biotechnology
Poojapura, Thiruvananthapuram
Kerala, India-695014
Tel: 91 471 2345899/2348753
Fax: 91 471 2348096
E-mail: anilamathew8@yahoo.com 

Lekshmy Srinivas
Human Molecular Genetics Laboratory
Rajiv Gandhi Centre for Biotechnology
Poojapura, Thiruvananthapuram
Kerala, India-695014
Tel: 91 471 2345899/2348753
Fax: 91 471 2348096
E-mail: lekshmyrgcb@yahoo.com 

Moinak Banerjee*
Human Molecular Genetics Laboratory
Rajiv Gandhi Centre for Biotechnology
Poojapura, Thiruvananthapuram
Kerala, India-695014
Tel: 91 471 2345899/2348753
Fax: 91 471 2348096
E-mail: moinak_ban@hotmail.com
moinak@gmail.com

*Corresponding author

Financial support: We thank the Department of Biotechnology and Indian Council of Medical Research of Government of India for Financial support and Research fellowship.

Keywords: 100bp ladder, cost effective, DNA size standards, endless usage.

Abbreviations:

AFLPs: Amplified Fragment LengthPolymorphisms
EDTA: Ethylene-Diamine-Tetra-Acetic acid
MCS: Multiple Cloning Site
PCR: Polymerase Chain Reaction
RAPD: Random Amplified Polymorphic DNA
SNPs: Single Nucleotide Polymorphisms

Abstract   Full Text

Developing countries are facing severe bottlenecks in the technological advancement in biotechnology, due to restrictions imposed by patent protected products and protocols. This calls for designing of simple and cost-effective alternatives for the indispensable products like DNA molecular weight markers. We demonstrate a novel, rapid and cost-effective method of making in-house 100bp ladder for routine use. In our method we use a single forward primer and five reverse primers designed on the backbone sequence of a commonly used vector template. These primers are used at a universal annealing temperature to amplify ten DNA fragments of accurate size ranging from 100bp to 1000bp. Our PCR-based method can provide size standards for an endless usage.

Supported by UNESCO / MIRCEN network