|
| Table 3. Data on the number of alleles, allele size range, highest allele frequency and genic diversity (H) at each 48 loci found among 18 rice genotypes. Allele number and genic diversity for each SSR marker were also calculated considering only the Venezuelan accessions (in brackets). |
Marker |
Chromosome location |
No. of alleles |
Size range (bp) |
Difference (bp) |
Highest frequency allele |
H |
|
Size |
Frequency |
||||||
(bp) |
(%) |
||||||
RM110 |
2 |
7 (5) |
142-162 |
20 |
142 |
36.1 |
0.792 (0.731) |
RM129 |
1 |
3 (2) |
188-208 |
20 |
208 |
72.2 |
0.426 (0.355) |
RM134 |
7 |
3 (2) |
85-99 |
14 |
95 |
66.7 |
0.475 (0.426) |
RM144 |
11 |
8 (5) |
220-257 |
37 |
220 |
38.9 |
0.779 (0.689) |
RM148 |
3 |
3 (2) |
131-138 |
7 |
131 |
58.8 |
0.526 (0.473) |
RM165 |
1 |
4 (1) |
180-190 |
10 |
190 |
77.8 |
0.377 (0.000) |
RM169 |
5 |
5 (2) |
166-180 |
14 |
166 |
77.8 |
0.383 (0.142) |
RM174 |
2 |
6 (4) |
204-228 |
24 |
212 |
33.3 |
0.765 (0.710) |
RM179 |
12 |
5 (4) |
188-195 |
7 |
192 |
36.1 |
0.752 (0.743) |
RM186 |
3 |
2 (2) |
115-132 |
47 |
132 |
63.9 |
0.461 (0.355) |
RM188 |
5 |
3 (1) |
212-225 |
13 |
212 |
88.9 |
0.204 (0.000) |
RM206 |
11 |
6 (4) |
130-152 |
22 |
135 |
77.8 |
0.384 (0.275) |
RM212 |
1 |
4 (3) |
113-135 |
22 |
117 |
52.8 |
0.628 (0.606) |
RM216 |
10 |
4 (3) |
131-146 |
15 |
135 |
36.1 |
0.707 (0.624) |
RM239 |
10 |
5 (3) |
143-152 |
9 |
146 |
44.4 |
0.710 (0.544) |
RM262 |
2 |
5 (4) |
138-158 |
20 |
156 |
36.1 |
0.742 (0.660) |
RM263 |
2 |
6 (4) |
158-187 |
29 |
160 |
33.3 |
0.753 (0.698) |
RM272 |
1 |
2 (1) |
120-123 |
3 |
120 |
94.4 |
0.105 (0.000) |
RM286 |
11 |
5 (3) |
98-123 |
25 |
98 |
55.6 |
0.636 (0.379) |
RM296 |
9 |
4 (3) |
117-128 |
11 |
121 |
66.7 |
0.512 (0.544) |
RM30 |
6 |
5 (4) |
77-87 |
10 |
82 |
72.2 |
0.455 (0.388) |
RM300 |
2 |
6 (3) |
116-172 |
56 |
125 |
50.0 |
0.679 (0.521) |
RM338 |
3 |
2 (1) |
183-186 |
3 |
186 |
88.9 |
0.198 (0.000) |
RM402 |
6 |
3 (2) |
130-140 |
10 |
135 |
61.1 |
0.512 (0.473) |
RM408 |
8 |
5 (2) |
120-130 |
10 |
123 |
52.8 |
0.640 (0.453) |
RM411 |
3 |
3 (2) |
107-115 |
8 |
107 |
66.7 |
0.475 (0.260) |
RM414 |
1 |
2 (1) |
220-225 |
5 |
220 |
83.3 |
0.278 (0.000) |
RM436 |
7 |
3 (1) |
83-134 |
51 |
85 |
77.8 |
0.364 (0.000) |
RM441 |
11 |
5 (3) |
186-195 |
9 |
189 |
50.0 |
0.685 (0.544) |
RM453 |
12 |
7 (4) |
165-190 |
25 |
173 |
47.2 |
0.640 (0.568) |
RM471 |
4 |
3 (2) |
200-210 |
10 |
210 |
50.0 |
0.526 (0.500) |
RM477 |
8 |
3 (1) |
218-225 |
7 |
220 |
77.8 |
0.364 (0.000) |
RM494 |
6 |
3 (1) |
178-207 |
29 |
178 |
83.3 |
0.290 (0.000) |
RM495 |
1 |
2 (2) |
149-161 |
12 |
149 |
61.1 |
0.475 (0.426) |
RM507 |
5 |
2 (1) |
250-255 |
5 |
250 |
77.8 |
0.346 (0.000) |
RM508 |
6 |
4 (3) |
221-255 |
34 |
221 |
44.1 |
0.642 (0.517) |
RM517 |
3 |
4 (2) |
260-287 |
27 |
260 |
66.7 |
0.512 (0.260) |
RM519 |
12 |
3 (1) |
119-138 |
19 |
138 |
77.8 |
0.364 (0.000) |
RM542 |
7 |
7 (3) |
91-113 |
22 |
94 |
66.7 |
0.537 (0.272) |
RM547 |
8 |
9 (4) |
200-295 |
95 |
200-295 |
27.8 |
0.815 (0.675) |
RM551 |
4 |
5 (4) |
180-198 |
18 |
192 |
32.4 |
0.758 (0.686) |
RM556 |
8 |
2 (2) |
88-95 |
7 |
88 |
72.2 |
0.401 (0.260) |
RM559 |
4 |
2 (1) |
158-161 |
3 |
158 |
77.8 |
0.346 (0.000) |
RM560 |
7 |
6 (4) |
237-268 |
31 |
239 |
50.0 |
0.687 (0.565) |
RM590 |
10 |
4 (3) |
130-146 |
16 |
146 |
69.4 |
0.480 (0.210) |
RM598 |
5 |
5 (4) |
149-167 |
18 |
160 |
66.7 |
0.525 (0.568) |
RM6 |
2 |
5 (4) |
145-163 |
18 |
163 |
38.9 |
0.724 (0.660) |
RM60 |
3 |
3 (1) |
160-167 |
7 |
164 |
83.3 |
0.290 (0.000) |
Total |
|
203 (124*, 112**) |
|
|
|
|
|
Mean |
|
4.23 (2.58*, 3.11**) |
|
|
60.9 |
0.524 (0.370*, 0.490**) |
|
*Mean values for the 48 SSR loci. |
|
|