Table 3. Details of SSR markers used, indicating their location on rice chromosomes, number of alleles detected, allele size range and polymorphism information content (PIC). |
Marker |
Chromosome |
SSR motifs |
Total alleles |
Polymorphic alleles |
Size range (bp) |
Difference |
PIC value |
RM1 |
1 |
(GA)26 |
5 |
5 |
75 - 135 |
60 |
0.678 |
RM10 |
2 |
(GA)15 |
2 |
2 |
142 - 159 |
17 |
0.124 |
RM13 |
5 |
(GA)16 |
2 |
2 |
130 - 150 |
20 |
0.336 |
RM16 |
3 |
(GA)15 |
3 |
3 |
165 - 187 |
22 |
0.256 |
RM17 |
12 |
(GA)21 |
3 |
3 |
160 - 185 |
15 |
0.395 |
RM19 |
4 |
(ATC)10 |
2 |
2 |
192 - 252 |
60 |
0.191 |
RM44 |
8 |
(GA)16 |
4 |
4 |
100 - 125 |
25 |
0.373 |
RM55 |
5 |
(GA)17 |
2 |
2 |
216 - 247 |
31 |
0.468 |
RM60 |
3 |
(AATT)5AATCT(AATT) |
2 |
2 |
162 - 176 |
14 |
0.394 |
RM70 |
7 |
(ATT)33 |
13 |
13 |
128 - 167 |
39 |
0.800 |
RM72 |
8 |
(TAT)5C(ATT)15 |
6 |
6 |
151 - 200 |
49 |
0.726 |
RM110 |
2 |
(GA)15 |
5 |
5 |
138 - 159 |
21 |
0.731 |
RM122 |
5 |
(GA)11 |
5 |
5 |
229 - 240 |
11 |
0.757 |
RM163 |
5 |
(GGAGA)4(GA)11C(GA)20 |
9 |
9 |
130 - 175 |
45 |
0.836 |
RM170 |
6 |
(CCT)7 |
4 |
4 |
99 - 119 |
20 |
0.654 |
RM182 |
7 |
(AT)16 |
8 |
8 |
328 - 349 |
21 |
0.833 |
RM201 |
9 |
(CT)17 |
4 |
4 |
144 - 159 |
15 |
0.540 |
RM202 |
11 |
(GA)30 |
5 |
5 |
161 - 190 |
29 |
0.735 |
RM222 |
10 |
(CT)18 |
3 |
3 |
199 - 225 |
26 |
0.545 |
RM223 |
8 |
(GA)25 |
4 |
4 |
140 - 170 |
30 |
0.623 |
RM224 |
11 |
(GA)13 |
4 |
4 |
118 - 157 |
39 |
0.662 |
RM234 |
7 |
(GA)25 |
3 |
3 |
133 - 163 |
30 |
0.633 |
RM241 |
4 |
(CT)31 |
5 |
5 |
104 - 149 |
45 |
0.831 |
RM242 |
9 |
(CT)26 |
3 |
3 |
197 - 255 |
58 |
0.444 |
RM252 |
4 |
(GA)19 |
9 |
9 |
194 - 262 |
68 |
0.738 |
RM253 |
6 |
(GA)25 |
4 |
3 |
117 - 146 |
29 |
0.434 |
RM257 |
9 |
(CT)24 |
3 |
3 |
132 - 147 |
15 |
0.653 |
RM263 |
2 |
(CT)34 |
5 |
5 |
162 - 199 |
37 |
0.374 |
RM302 |
1 |
(GT)30(AT)8 |
6 |
6 |
120 - 191 |
71 |
0.623 |
RM310 |
8 |
(GT)19 |
5 |
5 |
87 - 123 |
36 |
0.766 |
RM333 |
10 |
(TAT)19(CTT)19 |
4 |
4 |
166 - 196 |
30 |
0.629 |
RM348 |
4 |
(CAG)7 |
3 |
3 |
131 - 143 |
12 |
0.422 |
Total |
|
|
145 |
142 |
|
|
|
Average |
|
|
4.53 |
4.44 |
|
|
0.569 |
|
|