|
| Table 1. Transcription factors binding sequences on SN1 promoter according to PlantCare program. Selected Matrix score for all elements > = 5. |
Related Function |
Site Name |
Organism Described |
sequence |
Matrix score |
Position |
Strand |
Auxin |
AuxRR-core |
Nicotiana tabacum |
GGTCCAT |
7 |
1265 |
+ |
Anaerobic Induction |
ARE |
Zea mays |
TGGTTT |
6 |
702 |
- |
TGGTTT |
6 |
15 |
- |
|||
Defense and Stress |
TC-rich repeats |
Nicotiana tabacum |
ATTTTCTCCA |
9 |
1312 |
+ |
ATTTTCTTCA |
9 |
1005 |
- |
|||
ATTTTCTTCA |
9 |
1069 |
- |
|||
GTTTTCTTAC |
9 |
93 |
+ |
|||
Drought |
MBS |
Arabidopsis thaliana |
CAACTG |
6 |
611 |
+ |
Endosperm Expression |
Skn-1_motif |
Oryza sativa |
GTCAT |
5 |
876 |
+ |
GTCAT |
5 |
390 |
- |
|||
GTCAT |
5 |
452 |
- |
|||
GTCAT |
5 |
279 |
- |
|||
Enhancer |
5UTR Py-rich |
Lycopersicon esculentum |
TTTCTTCTCT |
9 |
846 |
+ |
TA-rich region |
Nicotiana tabacum |
TATATATATATATATATATATA |
20 |
206 |
+ |
|
Ethylene |
ERE |
Dianthus caryophyllus |
ATTTCAAA |
8 |
1203 |
+ |
ATTTCAAA |
8 |
146 |
- |
|||
ATTTCAAA |
8 |
594 |
+ |
|||
Gibberellin |
GARE-motif |
Brassica oleracea |
AAACAGA |
7 |
399 |
+ |
Heat stress |
HSE |
Brassica oleracea |
AAAAAATTTC |
9 |
823 |
+ |
AAAAAATTTC |
9 |
129 |
- |
|||
Light |
AAAC-motif |
Spinacia oleracea |
CAATCAAAACCT |
11 |
794 |
+ |
ACE |
Petroselinum crispum |
AAAACGTTTA |
9 |
69 |
+ |
|
Box 4 |
Petroselinum crispum |
ATTAAT |
6 |
244 |
+ |
|
Box I |
Pisum sativum |
TTTCAAA |
7 |
1202 |
+ |
|
TTTCAAA |
7 |
562 |
- |
|||
TTTCAAA |
7 |
696 |
- |
|||
TTTCAAA |
7 |
146 |
- |
|||
TTTCAAA |
7 |
708 |
- |
|||
TTTCAAA |
7 |
485 |
+ |
|||
TTTCAAA |
7 |
593 |
+ |
|||
CATT-motif |
Zea mays |
GCATTC |
6 |
1145 |
- |
|
GCATTC |
6 |
310 |
+ |
|||
GA-motif |
Arabidopsis thaliana |
ATAGATAA |
8 |
239 |
- |
|
GATA-motif |
Arabidopsis thaliana |
AAGATAAGATT |
10 |
544 |
- |
|
GT1-motif |
Avena sativa |
GGTTAAT |
7 |
175 |
- |
|
GGTTAAT |
6 |
174 |
- |
|||
I-box |
Flaveria trinervia |
cCATATCCAAT |
10 |
1305 |
+ |
|
LAMP-element |
Pisum sativum |
CTTTATCA |
8 |
1242 |
- |
|
Sp1 |
Zea mays |
CC(G/A)CCC |
5 |
1342 |
- |
|
CC(G/A)CCC |
5,5 |
331 |
+ |
|||
CC(G/A)CCC |
5 |
1341 |
- |
|||
TCT-motif |
Arabidopsis thaliana |
TCTTAC |
6 |
537 |
+ |
|
chs-CMA1a |
Daucus carota |
TTACTTAA |
8 |
755 |
+ |
|
TTACTTAA |
8 |
87 |
+ |
|||
Low-temperature |
LTR |
Hordeum vulgare |
CCGAAA |
6 |
988 |
- |
Meristem |
CAT-box |
Arabidopsis thaliana |
GCCACT |
6 |
1177 |
+ |
Metabolism |
O2-site |
Zea mays |
GATGACATGA |
9 |
875 |
- |
GATGA(C/T)(A/G)TG(A/G) |
8 |
-3 |
- |
|||
Methyl jasmonate |
CGTCA-motif |
Hordeum vulgare |
CGTCA |
5 |
1333 |
- |
TGACG-motif |
Hordeum vulgare |
CGTCA |
5 |
451 |
- |
|
TGACG |
5 |
1333 |
+ |
|||
TGACG |
5 |
451 |
+ |
|||
Salicylic acid |
TCA-element |
Brassica oleracea |
GAGAAGAATA |
9 |
1314 |
- |
GAGAAGAATA |
9 |
559 |
+ |
|||
Xylem expression |
AC-II |
Phaseolus vulgaris |
TCCACCAACCCC |
11 |
341 |
+ |
|
|
|