Table 1 - Detection of single nucleotide polymorphisms in the conserved ESTs regions of Gossypium arboreum

Table 1. G. arboreum ESTs selected for SNPs study, their best blast homology, primer sequences, copy number of genes showing homology with ESTs and their position in Arabidopsis thaliana.

	EST	Best Blast homology	Primer sequence	Copy number in Arabidopsis	Chromosomal position in Arabidopsis
1	CON_005_03587	Histone H2B-3	GCTTAGCCAATTCACCAGGC GCTCCAAGGTTGGTGAGAAG	Single	Chr.2
2	CON_001_09243	NADPH-cytochrome P450 reductase	CACCCATTTAACCCTTCTCGC TGTATGTGTGTGGTGATGCC	Single	Chr.4
3	CON_002_00475	Werewolf	AGGGATTATGGGCAATGGAG GTGGTTTCAGTGGTTGTTCC	Single	Chr.5
4	CON_003_03042	Putative ATP binding protein	GCCATGGTGAATACTCTGAG TCGCCTTCAGAGAAGATGA	Single	Chr.1
5	CON_003_02564	Common regulatory factor	CCATCTCTTTCGCTATCTGC AGATCGAAGTAAGCTCGGAC	Single	Chr.1
6	CON_004_03320	Photolyase/blue light photoreceptor PHR2	AGCTCAACAAGGAGTGAG TGAACTGGCTGATGTTCG	Single	Ch.2
7	CON_031_04487	S-adenosyl-L-homocysteine hydrolase	GTCAATGACTCTGTCACC GATGGTAATGCGCTTGAC	Single	Chr.4
8	CON_002_01213	Mitochondrial small heat shock protein	CTCTCCATCACCCTAAAG GTGGAACAGAACACACTC	Single	Mitochondrial
9	CON_001_10630	S-adenosyl methionine synthetase	CCAATGTGATGAAGCTCC GGTGTACCTGAACCATTG	Single	Chr.1
10	CON_008_04131	Histone H2B1	AGAGAAGAAGCCTAAGGC TCACCAGGAAGTACAAGC	Single	Chr.1
11	CON_006_03927	Actin-depolymerizing factor 2	CAACCGAAAGCTATGAGG TGTAGGAAGGAAGGAAGC	Single	Chr.3
12	CON_001_11154	CONSTANS-like protein 1	ACCATGCTGGAGAAGACTGG AGACGGAAGTACGATGACGG	Single	Chr.5
13	CON_006_03877	Profilin	CTCCAGTTCTCAACGAATCC AGGTACAATCCAGTTGGAGC	Single	Chr.2
14	CON_002_01989	60S ribosomal protein L24	GCAAGAGGTACTTCCACAAC ACTTATCGCTTTCCACCACC	Single	Chr.2
15	CON_001_10272	Similar to ATP-citrate-lyase	CGAGATAACCACTACTCC CCTACACCACTTCAATGC	Single	Chr.1
16	CON_002_02239	Contains similarity to protein kinase~gene	TGGCCGTAACAATCATGG TGCTTCCTTGCATCACAG	Single	Chr.1
17	CON_001_10467	putative transcription factor BHLH6	CTTCATCTTCAAGCCCAC ACGAACACCTTCGAGAAG	Single	Chr.1
18	CON_002_00682	60S ribosomal protein L4/L1	ACATAGTCACCTTCGTCC CGTCAGATATGACCAGAG	unknown	Chr.3
19	CON_005_03604	Histone H3.3	TCCGAGTCGTATCAGAAG CAGTTTCCTGATGAGGAG	Single	Chr.4
20	CON_001_05388	Luminal binding protein (BiP)	AGGATTGATGCTCGCAACAG CTCATCTCACCTACCTATGC	Single	Chr.5
21	CON_001_06492	Cystein proteinase	CCTCTTGTTGATGACTGG CATGTCTGGTTCAGTGTG	Single	Chr.2
22	CON_004_03318	Outer membrane lipoprotein - like	ACATGGGAAAGTGGTACGAG CTCACATCATACCCCAAGTG	Single	Chr.5
23	CON_001_00045	14-3-3-like protein	CCATCTCTTTCGCTATCTGC AGATCGAAGTAAGCTCGGAC	Single	Chr.1
24	CON_001_10976	Nucleotide-binding protein	GCTAGATCTCATTGCTGC GACTGTAGGGTACTGAAC	Single	Chr.1
25	CON_002_02249	RAD23 protein	CATCCCTTGTCTCTACACC ACAAGCTGTGCAAGTCACAC	Single	Chr.1
26	CON_013_04353	Elongation factor 1-gamma	GGACCTTGGTTAATCAGC CCGATCACCAACATCTTC	unknown	Chr.1
27	CON_001_12763	E2, Ubiquitin-conjugating enzyme, putative	GATCGTAACGGAGGTGGTAG GCAGGCAATTGGATCCTTCC	Single	Chr.5
28	CON_003_02574	Beta-galactosidase 1 like protein	GGCCATACTTGAACCTTG GTTAGGTTAGTGCCACAG	unknown	Chr.3
29	CON_009_04160	Alcohol dehydrogenase	TGTGGAGAGTGTAGGTGAGG GTGGACATTCCGCAGCTTAG	Single	Chr.1
30	CON_001_12406	vacuolar H+-ATPase subunit E	CGAGTAGGAGTTCAACATCG GTGCCGCTTTGAAATCTGAC	Single	Chr. 4

Supported by UNESCO / MIRCEN network

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