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| Table 2. Information of SSR, EST-SSR and EST-InDel markers localized in the genetic linkage map. Marker name, the accession number in Genbank and/or TIGR, the repeat type and motive, the allele size in bp, the sequence of forward and reverse primers and the linkage group in the genetic map is provided. |
SSR name |
GenBank access number |
Motive type |
Repeat type |
Product (bp) |
Forward primer (5´- 3´) |
Reverse primer (5´- 3´) |
LG |
HA77 |
BV727857 |
dinucleotide |
GA |
249 |
TGTAATCTGTATCACTTCCACC |
GTTGTTCTGTTAGGTCGTTCCG |
1 |
HA95 |
G67405 |
dinucleotide |
GA |
162-166 |
ACGCTTGATAGACAAATGCT |
TAGGCAGCAGGTTTTACTCT |
5 |
HA3621 |
BV728258 |
trinucleotide |
ATC |
158 |
TTAAATCTGGTGGCAACTTT |
TACTCGCTCCACCTCTACAT |
8 |
HA503 |
BV727935 |
dinucleotide |
GA-TA |
100 |
GTAGATCTTTCCCCTGCACCC |
GATGCGTTAGAGATAACCTG |
8 |
HA541 |
BV727938 |
dinucleotide |
GT |
220 |
CAACACACGCTTTGTTGGGTG |
CGATAAGGAGGGAGGGGAAGATAG |
3 |
HA911 |
BV727888 |
dinucleotide |
GA |
179 |
CAAAGTTCACCTCGTTTTTC |
AAGTGGGAAGGTCTACGAGT |
8 |
HA920 |
BV727955 |
trinucleotide |
ATC |
171 |
CCCCATGTAATCGCTTTAG |
GTGGGGATATAGTGTTCGGC |
10 |
HA1155 |
BV727896 |
dinucleotide |
GA-GT |
110 |
CAATCAAAACATGTGTATGTG |
GGATTCTGCTGAAAGGAGACAAC |
12 |
HA1626 |
G67417 |
trinucleotide |
ATT |
170 |
GATGTTACACGTTAGCAACG |
GAACTCAGCCTAAAAGTC |
13 |
HA1770 |
BV727917 |
dinucleotide |
GA |
186 |
GCCGGTCACCCATTCCCCCCTTAC |
GGCGGAAGCCAGGCGTTGTAGCG |
3 |
HA2190 |
BV728130 |
dinucleotide |
GA |
189 |
CAAACCCTAATCGCCCAATTGC |
GGAAGCTTGTGAATCTTGGAGGG |
3 |
HA2989 |
BV728090 |
hexa- trinucleotide |
ATCCTC-ATC |
145 |
GCCTGTGTCCTCCTCAGAGTC |
GTTATGTGGGCTGGCTGCACC |
14 |
HA3204 |
BV728181 |
trinucleotide |
ATC |
121 |
GCCCTTCAATCCTACCATTAA C |
GGATATTGAGTTGGTTGTTGGG |
10 |
HA3272 |
BV728357 |
dinucleotide |
TA GA |
123 |
TGTTCTCACACTTTTCACCA |
TAGGCCCTTAAATTCAGATG |
7 |
HA3312 |
BV728075 |
dinucleotide |
GA |
115 |
TAACTGCAACAGACATGGAA |
ATAACGATTGCACAACACAA |
6 |
HA3325 |
BV728106 |
dinucleotide |
GA |
222 |
GTCATTGCTTGAGTGTGAGA |
CGACGCTGAACATATACTTG |
2 |
HA3417 |
BV728230 |
dinucleotide |
GA |
122 |
TAATTGATTGGGGGTAAATG |
TATGATTTGGTGTGCTCAGA |
13 |
HA3640 |
BV728259 |
dinucleotide |
GA |
184 |
GCCATATCAATAACCAATCCC |
CAAAGCATGTGAGGACCAGAATG |
11 |
HA3703 |
- |
dinucleotide |
GA |
217 |
CAAATGCTGATTCCACACTA |
ATGGTTTCCTGTTTGAATTG |
4 |
HA3878 |
BV728314 |
trinucleotide |
ATC ATT |
262 |
TTTGTTTAGCATCATCATCATC |
GAGACCCTAACCATAACATGA |
7 |
HA3950 |
BV728296 |
dinucleotide |
C GA |
145 |
CATTCCTCACCAACATAACA |
CCCTTGAGTATGCTTCAAAC |
14 |
HA3971 |
BV728318 |
dinucleotide |
GA |
179 |
GGATCTCTCCTGGTCCTAGT |
GATCAATATCTTCCATGTTAT |
17 |
HA4011 |
BV728360 |
dinucleotide |
GA |
126 |
ACTTCTACCCTCCCCTTCTT |
CTGTACACGTGCTGCTTTAG |
13 |
HA4023 |
BV728189 |
dinucleotide |
GA |
254 |
CGTCGTCTATCTCCAGTAACC |
GAATCTTGGGACCTGAGTCACC |
9 |
HA4057 |
BV728333 |
dinucleotide |
GT |
172 |
AAACCCTTCCGACTTATCTC |
TAAAGAGAGAGCCCAACAAG |
3 |
HA4058 |
BV728334 |
dinucleotide |
AT |
156 |
GATTATGATTCCATGAGCCAAG |
CATCCTGTAATCCTGTCAATGTC |
14 |
HA4105 |
BV728354 |
dinucleotide |
GA |
118 |
GGGACTAGTTTGTAATATCTCTC |
GTTTGAGAGTGGTGATAGGTTATG |
3 |
HA4112 |
BV728340 |
dinucleotide |
GA |
183 |
TTGACTCTCCTTCTCGTCTC |
GCTCTCAAGAAATCGGTTAG |
2 |
HA4149 |
BV728355 |
dinucleotide |
GA |
111 |
TCAATTCATCGTGCATATCG |
CCAAAGTCCACCAAATCTTCC |
17 |
HA4264 |
BV728346 |
dinucleotide |
GT |
169 |
TCCCAAACCTACACCTCTAA |
AAACAAACTATGGATTAACAAGG |
14 |
ORS420 |
BV005977 |
dinucleotide |
GT |
138 |
TCATGGTGTTTGGTTTGTGTC |
TGCCAAATTCCTCTTCTTTCT |
15 |
ORS460 |
BV005998 |
dinucleotide |
GA |
302 |
ACTCGGCTACCACCTCACAC |
GCCCTTTGACCCTAACCAAG |
7 |
ORS483 |
BV006013 |
dinucleotide |
GT |
271 |
CCGAACAACAATCTCCACAA |
GGTTTAGGTGTCGCATCACA |
6 |
HA4149 |
BV728355 |
dinucleotide |
GA |
111 |
TCAATTCATCGTGCATATCG |
CCAAAGTCCACCAAATCTTCC |
17 |
HA4264 |
BV728346 |
dinucleotide |
GT |
169 |
TCCCAAACCTACACCTCTAA |
AAACAAACTATGGATTAACAAGG |
14 |
ORS420 |
BV005977 |
dinucleotide |
GT |
138 |
TCATGGTGTTTGGTTTGTGTC |
TGCCAAATTCCTCTTCTTTCT |
15 |
ORS460 |
BV005998 |
dinucleotide |
GA |
302 |
ACTCGGCTACCACCTCACAC |
GCCCTTTGACCCTAACCAAG |
7 |
ORS483 |
BV006013 |
dinucleotide |
GT |
271 |
CCGAACAACAATCTCCACAA |
GGTTTAGGTGTCGCATCACA |
6 |
ORS662 |
BV006121 |
dinucleotide |
AG |
314 |
CGGGTTGGATATGGAGTCAA |
CCTTTACAAACGAAGCACAATTC |
1 |
ORS679 |
BV006133 |
dinucleotide |
GA |
240 |
CCCTCCTCCCTCTTCACTTT |
CTCATCGGACAACCAGAACC |
12 |
ORS691 |
BV006140 |
dinucleotide |
CT |
447 |
GCATCTGAGCAACTGCGTTA |
ACCGTCCTTAGCTCTTGTGAG |
10 |
ORS788 |
BV006202 |
dinucleotide |
GA |
263 |
CTGGATAAAGATGGGATAAAGAGAG |
GGACCCACCAAGATTTGTTTT |
16 |
ORS934 |
BV006334 |
dinucleotide |
AG |
252 |
CGTTCCGATCTACAAGGTAAAGG |
AACATACACAAATCCACGCAGAG |
6 |
ORS993 |
BV006383 |
dinucleotide |
AG |
327 |
GTGTTACAATCCTTGCGTCGATA |
CAAACCACAGGGACCAAAATG |
16 |
ORS1065 |
BV006445 |
dinucleotide |
CT |
295 |
ACCGCTGTCAACACCTTAAACTC |
GGCTGGGAATCAACTGCTACTAC |
2 |
ORS1265 |
BV006617 |
dinucleotide |
CT |
222 |
GGGTTTAGCAAATAATAGGCACA |
ACCCTTGGAGTTTAGGGATCA |
9 |
Unigene |
TIGR |
Motive type |
Repeat type |
Product |
Forward primer (5´- 3´) |
Reverse primer (5´- 3´) |
LG |
TC15366 |
TC15366 |
InDel |
GGTTA |
282 |
ATGAATTGAAGCATGCAGTAG |
ATGAGTTCTTTATCAGCCAGTAT |
10 |
TC18146 |
TC18146 |
InDel |
CCAAATCT |
447 |
ATGAATTTTGGCTTGAAGAAGG |
TGCCGGGTATGTATATGGGAAT |
10 |
TC18194 |
TC18194 |
dinucleotide |
TG |
305 |
AGAGGGAAGACACAAACTGAC |
AATCAACTCATCATCAATCCA |
3 |
TC20625 |
TC20625 |
trinucleotide |
GAG |
209 |
GGTGGTTCACAAACATAAGG |
CTTCTTCTCCATTTCCAATCT |
4 |
TC21689 |
TC21689 |
trinucleotide |
GTG |
357 |
GTTACGGAGGTGGTGGTC |
CCAATAAACACAGAATCCAAA |
4 |
TC23602 |
TC23602 |
tetranucleotide |
GTTT |
200 |
TTCCAACACAAGGCATCA |
AAACAACAGTCACAATACATCAA |
8 |
TC23762 |
TC23762 |
InDel |
GTAGAAATTCTTTCTGAGGTA |
779 |
AAACTTCACGCAATGAGACT |
CAAGCTTCCCTACAAAGAAA |
14 |
TC24343 |
TC24343 |
tetranucleotide |
TTGT |
220 |
TAAGGCAAAGAACCAGGGAC |
ATGAAGCACAACTAAAGGCA |
16 |
TC24992 |
TC24992 |
trinucleotide |
AAT |
180 |
ACATTCACTTCTTCTCCATCA |
AGCCATACTGTCCTCCATACT |
8 |
TC25054 |
TC25054 |
pentanucleotide |
TTTAC |
318 |
TACCTTGACGATGACCAGA |
ACCTTACATTCCACCAAACA |
16 |
TC26323 |
TC26323 |
dinucleotide |
AT |
303 |
ATCACAAACCTCCTGACAAC |
CAACTCTTGGGTGGCTAA |
17 |
TC26869 |
TC26869 |
trinucleotide |
GAT |
288 |
AGAGGAGGAGTTTGTTGATGT |
CCAATAAACACAGAATCCAAA |
16 |
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