Molecular Biology and Genetics
EJB Electronic Journal of Biotechnology ISSN: 0717-3458 Vol.4 No. 3, Issue of December 15, 2001.
© 2001 by Universidad Católica de Valparaíso -- Chile Received July 12, 2001 / Accepted November 7, 2001
RESEARCH ARTICLE

Molecular dynamics simulations of active site mutants of rat liver arginase

Mauricio Canales*
Laboratorio de Biofísica, Departamento de Biología Molecular
Facultad de Ciencias Biológicas, Universidad de Concepción
Casilla 152-C Correo 3, Concepción, Chile
Tel: 56 41 203822
Fax: 56 41 239687
E-mail:
mcanale@udec.cl

Linda Westermeyer
Facultad de Agronomía, Universidad Adventista de Chile
Casilla 7-D, Chillán, Chile

Nelson Carvajal
Laboratorio de Enzimología, Departamento de Biología Molecular
Facultad de Ciencias Biológicas, Universidad de Concepción
Casilla 160-C Correo 3, Concepción, Chile
Tel: 56 41 203814
Fax: 56 41 968723
E-mail:
ncarvaja@udec.cl

* Corresponding author

Financial support: Project 4533 from Universidad de Concepción, Chile to M.C.A.

Keywords: arginase, arginine, molecular dynamics, optimization.

Abstract
Full Text

By using molecular dynamics (MD) simulations and crystallographic data for rat liver arginase, the substrate positions in the active sites of native and mutant forms of the enzyme, were compared and correlated with known kinetic consequences of mutations. The mutants compared were His 141Phe and His 141Asn. The simulations show that mutation His141Asn gives the greatest divergence from the atomic coordinates, when compared with the control native enzyme. The mutant Asp128Asn does not show a change in atomic coordinates in the substrate, in agreement with the concept that a change in the metal coordination is responsible for the loss of catalytic activity in this mutant. Results obtained agree with reported kinetic consequences of mutations in arginase.

Supported by UNESCO / MIRCEN network
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