Yeast lipases: enzyme purification, biochemical properties and gene cloning
Keywords: Candida, Geotrichum, lipase, Trichosporon, yeast.
Lipases are placed only after proteases and carbohydrases in world enzyme market and share about 5% of enzyme market. They occur in plants, animals and microorganisms and are accordingly classified as plant, animal and microbial lipases. Wherever they exist, they function to catalyze hydrolysis of triglycerides to glycerol and fatty acid. Like carbohydrases and proteases, lipases of microbial origin enjoy greater industrial importance as they are more stable (compared to plant and animal lipases) and can be obtained in bulk at low cost. Majority of yeast lipases are extracelluar, monomericglycoproteins with molecular weight ranging between ~33 to ~65 kD. More than 50% reported lipases producing yeast, produce it in the forms of various isozymes. These lipase isozymes are in turn produced by various lipase encoding genes. Among many lipase producing yeasts Candida rugosa is most frequently used yeast as the source of lipase commercially. This review is aimed at compiling the information on properties of various yeast lipases and genes encoding them.
Lipases (EC 184.108.40.206) are a class of hydrolases that are primarily responsible for the hydrolysis of acylglycerides. They are ubiquitous and indispensable for the bioconversion of lipids (triacylglycerol) in nature. In addition to their biological significance, lipases hold tremendous potential for exploitation in biotechnology. They posses the unique feature of acting at the aqueous and non – aqueous interface which distinguishes them from esterases (Verger, 1997; Schmidt and Verger, 1998). The concept of lipase interfacial activity evolved from restriction of their catalytic activity to interface between lipid and water. The catalytic activity of lipases depends largely on the aggregated state of substrates. Experimental evidences suggest that the activation involves unmasking and structuring of enzyme-active-site, through conformational changes, that require presence of oil-in water droplets. Recent studies on the structure of several lipases have provided some clues for understanding their hydrolytic activity, interfacial activation and stereoselectivity of lipases (Kazlauskas and Bornscheuer, 1998). Enzymes such as proteases and carbohydrases have been used industrially for a number of years and corner the largest share of the world wide enzyme market. Whilst lipases at present account for less than 5% of the market, this share has the potential to increase dramatically via a wide range of different applications.
The lipases catalyze wide range of reactions, including hydrolysis, inter-esterification, alcholysis, acidolysis, esterification and aminolysis. They catalyse the hydrolysis of fatty acid ester bond in the triacylglycerol (TAG) and release free fatty acids (ffa) (Sheldon, 1993). The reaction is reversible; the direction of the reaction depends upon the water content available in the reaction. In low water media lipases catalyse esterification, transesterification and interesterification. Biochemical and molecular characterization of a number of lipases of different sources has brought to light great deal of heterogeneity in them with regard to specificity, amino acid sequence and catalytic properties. Based on the inhibition of their enzyme activity by chemical modification, lipases were initially classified as serine hydrolases. Serine present attheir active site has been shown to be enclosed in the highly conserved domain and represents the only common feature shared by all determined lipases sequenced so far (Antonian, 1988).
lipases can be produced easily on a large scale by growing microorganisms
in a fermentor, yet their use was, till recently confined largely
to oleo-chemistry and dairy based industry. However the last quarter
of the 20th century has witnessed unprecedented use of
lipases in biotechnology, manufacture of pharmaceuticals and pesticides,
single cell protein production, biosensor preparation and in waste
managementetc(Torossianet al. 1991; Gandhi,
1997; Yadavet al. 1998, Pandey
et al. 1999; Jaeger et al. 1999; Saxena
et al. 1999).Lipases have become an integral part of the modern
food industry and are used in the preparation of a variety of products
including fruit juices, baked food, vegetable fermentation and dairy
enrichment. They are also used in leather industry for processing
hides and skins (bating) and for treatment of activated sludge and
other aerobic waste products where they remove the thin layer of the
fats and by so doing provide for oxygen transport. The lipid digesting
preparation is employed in sewage disposal plants in
Some of the common sources of lipases are tabulated in Table 1. Pancreatic lipase of porcine origin is one of the earliest recognized and is still the best known lipase. Plant lipases are not used commercially; the animal and microbial lipases are used extensively. The most important source of animal lipase is the pancreas of cattle, sheep, hogs and pigs. The disadvantage with pancreatic(/animal) lipases is that they cannot be used in the processing of vegetarian or kosher food. Also, that these extracts contain components which have undesirable effect. The pig pancreatic extract contains trypsin, which produces bitter tasting amino acids. They are also likely to contain residual animal viruses, hormones, etc.
Microbes are major source of the 100 or so enzymes produced industrially for reasons mentioned above. Yeast has been used in food and other industries since ages. They have earned acceptability since long and are considered natural. Yeasts are also considered to be easy to handle and grow, in comparison to bacteria (Kademi et al. 2003).
Among microbial lipases extensive reviews have been written on bacterial lipases (Jaeger et al. 1999; Arpigny and Jaeger, 1999). Yeast lipases have received a raw deal despite the fact that Candida rugosa is the most frequently used organism for lipase synthesis. Benjamin and Pandey (1998) have written a review exclusive on Candida rugosa lipase. The information on numerous other yeast lipases is scattered. This communication is aimed at organizing the literature available on other yeast lipases. The areas reviewed are application, protein purification, and biochemical properties of yeast lipases and characterization of genes encoding these enzymes.
Lipases produced by various yeasts have been tabulated in Table 2.
lipase produced by Candida rugosa is fast becoming one of the
most industrially used enzymes. This is because of its use in avariety
of processes due to its high activity, both in hydrolysis as well
as synthesis (Redondo et al. 1995). A Japanese company
has used the Candida rugosa lipase for production of fatty
acids from castor bean long back in 1985 (Macrae and
Hammond, 1985). Pandey et al. (1999) investigated
the production of flavour in concentrated milk and creams by using
microbial lipases. Organolephtically each lipase develops a characteristic
flavour. The Candida rugosa lipase was rated the most suitable
lipase in this case. Candida
detergent industry, lipases find use as lipid stain digesters. Lipases
from Candida cylindracea and Candida lypolytica (now
Yarrowia lipolytica) are choice enzymes for the purpose (Pierce
et al. 1990; Batenburg et al. 1991).Polyglycerol
and carbohydrate fatty acid esters are widely used as industrial detergents
and as emulsifiers in variety of food formulations (low fat spreads,
ice creams, mayonnaise). Enzymatic synthesis of functionally similar
surfactants has been carried out at moderate temperature (
A promising new field is the use of microbial lipase as biosensors. Biosensors can be chemical or electronic in nature. An important analytical use of lipases is determination of lipids for clinical purpose (Pandey et al. 1999). The basic concept is to utilize a lipase to generate glycerol from triacylglycerol and quantify the released glycerol or alternatively the non-esterified fatty acid by chemical and enzymatic method. This principal enables physicians precisely to diagnose patients with cardiovascular complaints. Non-specific lipases, especially of Candida rugosa with high specific activity has been selected to allow rapid liberation of glycerol Candida rugosa lipase biosensor, which optically conjugates to biorecognition group in DNA, has been developed as probe by Pittner et al (1995,cf. Pandey et al. 1995).
The application of lipases in organic synthesis is tremendous. Stereoselectivity of lipases for resolution of racemic acid mixture in immiscible biphasic system has been demonstrated. Efficient kinetic resolution processes are in vogue for the synthesis of Niknomycin-B, non-steroid anti-inflammatory drugs Naproxen, ibuprofen, suprofen and ketoprofen, the potential antiviral agent lamividine (that can also be used against HIV) and enantiospecific synthesis of antitumour agents alkaloids, antibiotics and vitamins (Pandey et al. 1999). Hernaiz et al. (1997) have isolated two iso-forms, labelled A and B from Candida rugosa that are stereoselective.
of optically active amines that are intermediate in preparation of
pharmaceuticals and pesticides have been described by Smidt
and his coworker (1996).This involved reacting stereospecific
N-acylamines with lipase preferably from C.
steryl esters, resin acids, free fatty acids and sterols which are
lipophylic extractives (/extracts) of wood (commonly referred to as
pitch or wood resin) have negative impact on paper machine run ability
and quality of paper. Kontkanen and his group (2004)
in their study tested 19 commercial lipase preparations able to show
degradation of steryl esters. They found lipase preparations of Pseudomonas
sp. Chromobacteriumviscosum and Candida rugosa were shown to have
highest steryl esterase activity. All the three enzymes were able
to hydrolyse steryl esters totally to completion in presence of a
surfactant (thesit). Preliminary characterization of enzymatic activity
revealed that the lipase preparation of Pseudomonas sp. could
be the most potential industrial enzyme but among yeast Candida
rugosa lipase (CRL) ruled the roost (Kontkanen et
al. 2004). To introduce polymer to cellulosic material a new approach
was developed by Gustavsson et al. (2004) using
ability of a cellulose binding module of Candida
Like many other microbial lipases, yeast lipases are also purified by two major purification techniques i) precipitation techniques (with salts, alcohols etc.) and, ii) chromatographic techniques (ionic, hydrophobic interaction, affinity and molecular sieving). Table 3 summarizes some of the properties of reported yeast lipases.
are several reports on the multiple forms of lipases produced by the
microorganism. This multiplicity has been ascribed to post–transcriptional
processing, existence of different genes, deglycosylation etc. Among
yeasts Candida aldicans, Candida
strains of Candida rugosa / cylindracea (L.1754, ATCC 14830,DSMZ
2031) are known to produce lipase. Purification and characterization
has been reported for a number of them. Two distinct lipases from
Candida rugosa (C. cylindrcea L.1754) were identified
and separated by high-resolution anion exchange column mono Q after
ethanol extraction of crude lipase. Lipase I eluted at
years latter Chang and his group (Chang et al. 1994)
reported that PAGE pattern of lipolytic enzymes obtained from three
commercial samples (different manufacturers) of Candidarugosa
lipase differed. They studied the effect of culture conditions on
the production of lipase from Candida rugosa (ATCC 14830) and
proposed that culture conditions not only influence the production
of lipase but also changed the pattern of formation of multiple forms
of lipase. They showed presence of tween 20 and
Lotti and her group in the University of Milan, Italy have been studying various aspects of lipase production by Candida rugosa/cylindracea for about a decade. They (Lotti et al. 2001) undertook a flow cytometric study to evaluate growth-production process of Candida rugosa cells of different culture media. The yeast follows a complex pattern of lipase production depending on the presence of multiple lipase encoding genes whose expression is modulated by Carbon source. The C-source employed during fermentation can act as a repressor e.g. glucose, sorbitol. Neutral substrates may be successfully employed in two-step fermentation, where the first step of biomass growth is followed by the induction of lipase gene expression. Most of the lipases including those from Candidarugosa are glycosylated in conformity with rest of the lipases Candidarugosa lipases are widely used in biotransformations on account of their thermal stability and substrate specificity. The percentage and nature of carbohydrate attached seem to be important in structure interaction of glycoprotein with oil water interface, thermal stability, hydrophobic hydrophilic interaction, and over all catalytic activity of lipases.
Elimination of non-covalently bound sugar produces diminution in enzymatic activity in hydrolysis of tributyrin, in synthesis of heptyl oleate and in thermal stability. The equilibrium of this enzyme with lactose or with dextran produces partial reactivation of the biocatalyst.
and Pandey (2001) isolated and characterized three distinct forms
of lipases from Candida rugosa (DM - 2031), produced in solid-state
fermentation. Three distinct forms of extra-cellular lipase (lipA,
lipB, and LipC) were isolated by ammonium sulphate precipitation,
dialysis, ultra filtration and gel filtration using Sephadex-200.
The purification was 43-fold with specific activity 64.35 mg/ml. SDS-
PAGE of purified lipase revealed three distinct bands indicating the
existence of three iso-forms with apparent molecular weight of 64,
62 and 60 kD. All the three forms have optimal activity at 35-
Lopez et al. (2004) compared three pure isoenzymes from Candida rugosa (CRL: Lip 1, Lip 2 and Lip 3) in terms of their selectivity and reactivity in both aqueous and organic media. This analysis indicated that Lip 1 and Lip 3 have similar stability, lower than that of lip2. In aqueous media however Lip 3 was the most active enzyme so far as hydrolysis of P-niotrophenyl ester is concerned and Lip 1 showed highest activity on the hydrolysis of most assayed triaylglycerides. High difference in the isozyme was found in hydrolysis of triacylglycerides. Short, medium and long acyl chain triacylglycerides was preferred substrate for Lip 3, Lip 1 and Lip 2 respectively. In organic media Lip 1 and Lip 3 provided excellent results in terms of enantioselectivity in the resolution of ibuprofen (value over 0.90) and conversion, whereas initial esterification rate was higher for Lip 3, Lip 2 resulted in lower values of conversion, enantiomeric access and enantioselectivity. The performance of pure isozyme in enantioselectivity and esterification of substrate was compared with different CRL crude preparation with known isozymatic content and the different results could not be explained on their isoenzymatic profile.
As CRLs can be hardly separatedfrom each other and characterized as pure proteins, detailedinformation is available for only some of them. CRL1 over expressedin Pichiapastoris was found to exert highest activity on medium-chainsubstrates (C8-C10) in the hydrolysis of both triglyceridesand methyl-esters, whereas recombinantCRL4 and CRL2 overexpressed in Pichiapastoris acted preferentiallyon long-chain molecules (C16 - C18).A third isoform, CRL3, is characterized by itssignificant activity on short-chain soluble substrates and by its ability to hydrolyse cholesterol estersof long-chain fatty acids. Cholesterol esteraseactivity was also demonstrated more recently in CRL2 (Brocca et al. 2003).
of species of genus Geotrichum are known to produce lipases
most of themextra-cellular. Tsujisaka et al. (1973)
purified lipase of GeotrichumcandidumLink by means of ammonium
sulphate fractionation, DEAE - Sephadex chromatography and gel filtration
of sephadex G-100 and G-200. The purified enzyme was subsequently
crystallized. The crystallized preparation was found to be homogenous
electrophoretically as well as centrifugally. The molecular weight
and pI value of the enzyme were estimated to be ~55 kD and ~4.33.
The crystalline preparation contained about 7% carbohydrate and a
very small amount of lipids. This lipase was active on olive oil at
pH 5.6 and 7.0 at
forms of lipases have been isolated from Geotrichumcandidum
ATCC 34614 by combining of ethanol precipitation and chromatography
on Sephacryl HR anion exchange and polybuffer exchange 94. The molecular
weight of enzymes has been estimated to be ~56 KD. The optimum pH
value and isoelectric focusing point of the iso-forms is 6.8 and 6.0
and 4.46, 4.56 for lipase I and II respectively. The enzymes are found
to remain stable in the pH range 6.0 - 8.0. Monovalent ions had little
effect on activity of both the enzyme whereas divalent ion at concentration
above 50mM inhibited the activity in concentration dependent manner.
At concentration less than
Like species of genus Candida, Geotrichumcandidum is also known to produce various forms of lipase. Purification and characterization of different lipase iso-forms produced by various strains of Geotrichumcandidum is difficult on account of overlapping in their physical and biochemical properties. At times the heterogeneity is result of the difference in glycosylation. The reports that appeared recently on substrate selectivity of apparently purified lipase iso-forms are contradictory.
Shimada et al. (1990) reported that there is no significant difference in the substrate selectivity of two lipase iso-forms of Geotrichumcandidum ATCC 34614, although the two forms have slightly different stability and biochemical properties. In contrast, the lipase iso-forms (termed lipase A and B) from strain Geotrichumcandidum CMICC 335426 have shown to have markedly different substrate specificity (Sidebottom et al. 1990) These investigators also isolated two isozymes from stain ATCC 34614 which showed selectivity similar to those of the two iso-forms isolated from the strain CMICC 335426. Moreover comparison of specificity profiles and partial peptide sequences revealed that lipase A is similar to lipase II and lipase B is similar to lipase I. The contradictory results about the substrate selectivity of various isozymes may be on account the different growth conditions employed by different investigators. Growth conditions are known to alter relative yields of lipases produced by Geotrichumcandidum. On the other hand, the presence of multiple, differentially expressed lipase genes coding for products having similar chromatographic properties cannot be ruled out. Two lypolitic enzymes were isolated from the culture fluid of yet other species of Geotrichum,Geotrichumasteroides by Kazanina et al. (1981). Lipase produced by Trichosporonheteromorphum ATCC 20001 were examined in media containing soyabean oil and residues but at present the strain ATCC 20001 has been reidentified as Geotrichumklebahnii. Using high-performance liquid chromatography Jacobsen and Poulsen (1992) isolated two lipolytic proteins with MW ~61 and ~57 kD from Sephadex G-100 fraction of extracellular lipase from Geotrichumcandidum ATCC 66592 were separated. Purified lipases were immunologically identical, but differed substrate specificity.
yet another yeast studied in detail for lipase production. So far
four species of the genus are reported to produce lipase. Chen
et al. (1992) isolated Trichosporonfermentans WU–C12 from
soil that showed maximum lipase production (128 U/ml) after four days
of growth at
TrichosporonfermentansWU-C12 lipase (TFL I) is almost identical to Geotrichumcandidum lipase I and II which suggests similarity in their three dimensional structure. G. Candidum ATCC 34614 produces 2 or four kinds of monomeric lipases whereas Tichosporonfermentans WU-C12 lipase I am trimer with molecular mass of 160 KD as determined as by gel filtration. Difference in the number of subunits in mature lipases in both the genus lead to different substrate specificity. In addition difference of three amino acid residues and /or glycosylation might have an effect on unit structure of TFL GCL, II and I.
lipase producing species of Trichosporon is Trichosporonasteroids
that was isolated from raw milk Dharmsthiti and Ammaranond
(1997). The lipase was purified to homogeneity (eight fold) using
various techniques including ammonium sulphate fractionation and gel
filtration on Sephadex G200. The molecular weight of this lipase was
estimated to be ~37 KD with temperature and pH optima of
Yarrowia lipolytica and other yeasts
enzymes are secreted by Yarrowia lipolytica (earlier Saccharomycopsis
lipolytica, Candida lipolytica, Candida paralipolytica) and lipase
and esterase activities have been detected and analyzed in variousstudies
(Sugiura et al. 1976; Ota et al 1982;
Ota and Yamada, 1966). Lipase secretion was first
reported in 1948 by Petersand Nelson (Pignede et al.
2000a). An extracellular and two cell-bound types of activitycorresponding
to lipase I (39 kDa) and lipase II (44 kDa) weredescribed by Ota and
coworkers (Sugiura et al. 1976; Ota
et al. 1982). Cell bound enzymes were purified from the organism
with total recovery of 8% by chromatography on CM -Sepharose CL-6B,
DEAE - Seharose CL-6B and Sephadex G-100columns. The purified lipase
requires oleic acid for the hydrolysis of triglycerides and hydrolyses
tricaprylin at largest initial rate. Under experimental conditions
the pH optima for hydrolysis of olive oil as substrate were about
8.0. Both enzymes remain stable for 20 min below
Kluyveromyces lactis is yet another yeast that produces extra cellular phospholipase B (PBL) (Oishi et al. 1999). The enzyme purified to homogeneity from culture medium is highly glycosylated with apparent molecular weight of 160-250 kD. The enzyme has two pH optima, pH 2.0 and pH 7.5. The enzyme was reported to have at acidic pH the enzyme hydrolyses all phospholipids substrates with out metal ion .On the other hand at alkaline pH it showed specificity for phosphatidylcholine and lysophosphatidylcholine and required Ca++, Fe+++ or Al+++ for activity. The alkaline activity gets increased over 20 fold in presence of Al+++ compared to the presence of Ca++.
extracellular lipase produced by the glycolipid-producing yeast Kurtzmanomyces
sp. I-11 was purified by ammonium sulfate precipitation and column
chromatographies on DEAE-Sephadex A-25, SP-Sephadex C-50, and Sephadex
G-100 (Kakugawaet al. 2002). Its molecular mass
was estimated to be approximately 49 kDa. By SDS-PAGE and optimum
temperature for the activity was
In view of wide application of lipases referred to above and, difficulties in purifying their various isozymes due to their overlapping biochemical properties and obtaining these enzymes in bulk, attempts have been made to directly clone genes encoding them. It started with the primary objective to unravel the peptide structure of the enzyme, which is required to understand the molecular mechanism underlying the catalytic reaction and the relationship between the structure and function of lipase. Lipases gene of number of yeasts have been cloned and expressed, hyper expressed and bioengineered.
Lotti et al. (1993) reported that lipases of Candida cylindracea are encoded by multiple genome sequences, now on the basis of DNA-DNA homology at least seven are presumed to be present. Brocca et al. (1995) isolated and cloned 5 different forms of lipase from the species. The five-lipase genes comprising lipase gene family of Candida rugosa exhibit 80-88% pair wise identity, in nucleotide sequence. All genes encoding these isozymes are located on the same chromosome, which suggests their origin through gene duplication. Expression of cloned genes of genus candida is demanding due to strong codon bias in candidaspp. as universal leucine sequence codon CUG is used for serine (Ohama et al. 1993). CUG is used with high frequency (3% of the codon) in LIPI of Candida cylindracea including those corresponding to catalytic site. All the lipase sequences show distinct pattern for several restriction sites and not minor variation as would be expected in case of alleles. Sequence analysis performed on 5 fully sequenced genes demonstrated that the highest identity between any two-lipase genes is 88%, a value less than usually observed in allelic variants of the same gene. The available sequences of CRL correspond to isozymes derived from the strain ATCC 14830. The inconsistencies in catalytic properties reported from different laboratories are due to presence of different lipase proteins in Candida cylindracea whose composition and ratio may be different in different commercial lipase preparations, possibly depending on the strain and media components used. Presence of multiple isoforms of lipases in Candida spp. is well established (Chang et al. 1994). Lotti and Alberghina (2003) indicated that CRL- encoding genes are subjected to regulation at the level of transcription depending on the composition of culture medium and the physiology of culture growth. This complex family of enzymes provide Candidarugosa cells with large and versatile pool of catalysts to suit the composition and environment of the culture media. However significance of lipases for the growth of Candida rugosa growth far from clear at present. The heterologous expression of cloned genes in host cells is desirable in the case of CRLs not only because of the well known advantages it offers in making large amount of purified enzymes available but also because it seems to be the only feasible approach to obtain pure CRL isoforms without the need of any sophisticated purification techniques required to separate similar proteins. Compared to commercial lipase preparation the recombinant Lip I showed a comparable activity towards triacylglycerides different in acyl group chain length and various methyl-esters differing in acyl group chain length (Brocca et al. 1998). Secretion of 200 ug lipase ml (-1) culture was achieved in sorbitol - based medium, in batch cultivation of Pichiapastoris expressing Candida rugosa lipase I (CRLI) (Passolunghi et al. 2003). These workers found that the large amount of recombinant protein was retained intra-cellularly throughout the fermentation pointing to transport step as a major bottleneck. To monitor the product localization and amount a translational fusion product with green fluorescent protein (GFP) was constructed that was expressed and translated by this group.
A lipase encoding gene was isolated from the pathogenic yeast Candida albicans (ATCC 36082) by transforming the lipase minus strain of Saccharomyces cerevisiae with genomic library of Candida albicans and screening for lipolytic activity (Fu et al. 1997). Two identical clones exhibiting lipolytic activity were identified. Their nucleotide sequence analysis identified an ORF encoding a protein of 351 amino acid residues. The sequence contained the Gly-X-Ser-X-Gly- motif found in all prokaryotic and eukaryotic lipases, suggesting a similar activity for encoded the proteins. Southern analysis, using this lipase as probe, has suggested that lipase gene may be present in Candida glabrata, Yarrowia lipolytica (formally C. parapsilosis), Candida tropicalis, Candidakrusci but not in,Candida pseudotropicalis or Saccharomyces cerevisiae. Northern blot analysis has shown that expression of lip I transcript is detected only when Candida albicans was grown in media containing tween 80, other tweens or triglycerides as the sole carbon source. Whereas Sabouraud Dextrose broth or yeast/peptone/dextrose and carbohydrate supplementation inhibited LIPI expression. Hube et al. (2000) have cloned and characterized 10 lipase genes in Candida albicans. The ORF of all the reported Candida albicans lipase genes are 1281 - 1416 bp long and encode highly similar proteins having up to 80% identical amino acid sequence. Each deduced lipase sequence has conserved lipase motif, 4 conserved putative N-glycosylation sites and similar hydrophobicity profiles. Lip 3 – Lip 6 is expressed in all media at the times of growth when tested by Northern blot and PCR analysis. Lip 1, 2, 4, 5, 6, and 8 were expressed in media having tween 40 as the sole carbon source. These genes are also expressed in media deficient in lipids. Transcripts of most lipase genes were detected during yeast to hyphal transition. Lip 5, 6, 8, and 9 were found to express during experimental infection of mice. These data reveal lipid independent, highly flexible in-vitro and in-vivo expression of large number of Lip genes, possibly reflecting broad lipolytic activity, which may contribute to the persistence and virulence of Candida albicans in human tissue. Stehr et al. (2004) investigated expression pattern of multigene family of Candida albicans using reverse transcription polymerase chain reaction in experimental infections and in samples of patients suffering from oral candidosis. The finding illustrate that individual lipase genes are differentially regulated in a mouse model system. This study indicated that the lipase gene expression profile depended on stage of infection rather than on organ localization. The temporal regulation of lipase gene expression was also detected in an experimental model of oral candidosis.
deformans CBS 2071 extra-cellular lipase has been cloned by complementation
in accharomycecerevisiae with the genomic library of Candida
deformans (Bigey et al. 2003). Three members
of the lipase gene family CdLIP1, CdLIP2 and CdLIP3 were cloned and
characterized. The MADLI-TOF data suggests that it is LIPI that produces
the extra-cellular lipase. Each deduced lipase sequence has a Glu-His-Ser-Leu-Gly-
et al. (2002) cloned and the over expressed the genecoding lipase
from Candida parapsilosis CBS 604. Two ORFs (CpLIP1
and CpLIP2) wereisolated and the deduced 465-amino-acid protein
sequences containedthe consensus motif (G-X-S-X-G) which is conserved
among lipolyticenzymes. Only one of the two deduced proteins (CpLIP2)
containedpeptide sequences obtained from the purified lipase/acyltransferase.Homology
investigations showed that CpLIP2 has similaritiesprincipally with
11 lipases produced by Candida albicans (42 - 61%)and the lipase
A from Candida
lipases lipase A and B have been cloned and expressed by an extremophile
The yeast Geotrichumcandidum produces isozymes in culture medium that show close physical and biochemical properties but are different as for as substrate specificities are concerned. Shimada et al. (1989) isolated the lipase encoding cDNA clone of Geotrichumcandidum ATCC 34614 (Geo) from the Geo. cDNA library by colony hybridization. The library was probed by 32P -labeledoligonucleotides corresponding to a partial amino acid sequence of this enzyme. The nucleotide sequence of this cDNA determined by dideoxy chain termination method. The deduced amino acid sequence from cDNA coincided with the sequence of the protein. The cloned cDNA coded a protein of 554 amino acids and a hydrophobic signal sequence of 19 amino acids. Geotrichum lipase contains the Gly-X-Ser-X-Gly sequence, which is believed to form part of the interfacial lipid recognition site. Use of this cDNA as probe during Southern DNA analysis of Geotrichumcandidum genome indicated existence of two genes on the chromosome of the yeast. Following these leads two forms of lipase (lipase I and II) were actually isolated and purified from this yeast. The two lipases isoenzymes have similar amino acid composition but different terminal sequences not found in the primary structure of lipases I deduced from the cDNA sequence. This confirmed the presence of two different lipase genes and ruled out the possibility of the formation of observed multiple forms by proteolytic digestion (Sugihara et al. 1990). The same year Shimada et al. (1990) cloned and sequenced the cDNA for lipase II of Geotrichumcandidum. They found the overall length of the two lipases is same, the overall identity being 84%. Homology search has indicated that the Geotrichumcandidum lipase and Candida cylindracea lipase are homologous enzymes and are members of the cholinesterase family. Three years latter, Nagao et al. (1993) using the previously isolated lipase I and II cDNAs as probe isolated two chromosomal lipase genes lip 1 & 2, encoding lipase I and II. Both the genes were reported to contain contained 5’- and 3’- flanking regions in addition to coding region. Both the coding regions contained no introns and exhibit 86% homology in nucleotide sequence. Vernet et al. (1993) cloned, and sequenced the gene encoding lipase II of Geotrichumcandidum strain ATCC 34614 (GCL II) after amplified using the polymerase chain reaction. The intron less lipase gene was expressed and secreted from Saccharomyces cerevisiae at approximately 5 mg/liter of culture. Recombinant GCL II was purified by immunoaffinity chromatography and characterized using a combination of substrates and independent analytical methods. Bertolini et al. (1994) have reported that lipase iso-forms may be present in other Geotrichumstrains as well, but their purification and isolation is difficult on account of their overlapping physical and biochemical properties. Bertolini and his group (1994) have located lipase genes present in four strains (ATCC 34614, NRCC 205002, NRRLY-552 and NRRLY -553) of Geotrichumcandidum by molecular cloning by polymerase chain reaction. Each strain contains two lipase genes that are closely related to lipase I and II of Geotrichumcandidum ATCC 34614, so far investigated. Each lipase – gene family exihibits sequence variation (polymorphism), which is confirmed by southern analysis as well. Only two genes are found in each of the strain investigated and the biochemical studies also suggest the existence of lipase with at least two different substrates specificities. Most of the amino acid substitutions are located on the protein surface; some are present in structural features possibly involved in determining substrate specificity. The conflicting reports about existence of more than two lipase isoforms probably originate from differential expression of these genes in different culture conditions, heterogenesis in posttranslational modification and different efficiency of purification. Catoni et al. (1997) studied Geotrichumcandidum ATCC 335426 lipases A and B in P. pastoris. The sequences encoding mature lipases were fused in frame with the µ-factor signal sequence and expressed under control of the AOX 1 promoter. Depending on the clones, the extracellular production of lipases A and B varied from 1 U/ml to 23 U/ml and 1 U/ml to 50 U/ml, respectively. Optimization studies of recombinant lipase B production increased the activity to 200 U/ml of culture medium.
Arai et al. (1997) isolated a cDNA clone encoding extra-cellular lipase ofTrichosporonfermentans WU-C12 (TFL I) by using 0.8 kb fragment amplified by PCR with synthetic nucleotide corresponding to partial amino acid of TFL I. On characterization it emerged the cDNA clone contains 1689 bases long ORF, which encodes 563 amino acids from the ATG initiation codon. Two potential sites for N-glycosylation are found in this enzyme. Complete data search indicated high homology between TFL and Geotrichumcandidm lipase (GC ATCC 34614). Mature lipase I (TFL I) ofTrichosporonfermentans WU-C12 Is 84 % and 99.5% homologus to GCL I and II respectively at amino acid level and nucleotide sequence identities are 86.1% and 99.9% respectively (Arai et al. 1997). There are differences of only 3 amino acid residues at position 23-25 between TFL GCL II and I. The deduced amino acid sequence of mature TFL I share 41% and 42.3% overall identity with those of lipase III and IV from Candida cylindracea earlier cloned by Lotti’s group.
Yarrowia lipolytica and other yeasts
Several lipases have been detected in Yarrowia lipolytica, including intracellular, membrane-bound, and extracellular enzyme. Three lipase encoding genes have been isolated from Yarrowia lipolytica, lip1 code for 486-aa and lip3 which codes for 498-aa lipase. Lip1 and lip3 are reported to be intracellular but lip2 which has been isolated by Pignede et al. 2000a and Pignede et al. 2000b, belongs to the class of extra-cellular lipases. PCR and Southern analysis show that unlike some yeasts, like Candida rugosa and G. candidum in which several highly homologous genes are present Y. lipolytica has a single gene encoding extracellular lipase. This is also supported by the low residual extracellular lipase activity(less than o.5% U/ml) (Pignede et al. 2000a and Pignede et al. 2000b).
The phospholipase encoding cDNA of Kluyveromyces lactis was identified by combination of several procedures and sequence was designated as KILB. KIPLB encods a protein consisting of 640 amino acids. The deduced amino acid sequence showed 66.7% similarity with the TrichosporondelbrueckiiPLB.The amino acid sequence contained the lipase consensus sequence (G-X-S-X-G) and the catalytic aspartic acid motif.
lipase-encoding Arxulaadeninivorans, ALIP1 gene was isolated
using fragments of lipase isolates obtained by trypsin digestion for
the definition of oligonucleotide primers in a PCR screening approach
(Boer et al. 2005). The gene harbours an ORF of 1347
bp encoding a 420 amino acid protein of some 50 kDa preceded by an
N-terminal 28 prepro-secretion sequence. The deduced amino acid sequence
was found to be similar to the lipases from Candida albicans
and Candida parapsilosis (34-38% identity) and more distantly
related to other lipases. The sequence contains the consensus pentapeptide
motif (-Gly-X-Ser-X-Gly-) that forms a part of the interfacial lipid
recognition site in lipases. The expression of the gene is regulated
by carbon source. In media supplemented with Tween 20, induction of
the ALIP1 gene and accumulation of the encoded lipase in the medium
is observed, thus demonstrating gene regulation by lipophilic compounds.
The enzyme is dimericwith pH optimum at pH 7.5 and a temperature
Like most other organisms lipases are ubiquitous in yeasts. Lipases are amongst the most important biocatalysts that carry out novel reactions in aqueous and non - aqueous media. They show wide variety of chemio-, regio- and enantioselective transformations. The ease in handling them, their broad substrate tolerance, high stability under varied temperature and solvents, high enantioselectivity and easy availability account for their wide spread popularity. As a result, today they have earned immense application in different areas of industrial microbiology and biotechnology where they display amazing versatility in catalytic behaviour. Yeast lipases are quite relevant to biotechnology industries and attract special attention, as yeast products have been consumed by man since ages and are considered safe and natural. Yeast lipases by and large are extracellular, monomericglycoproteins though there are some reports like in Yarrowia lipolytica wherein lipase two out of three isozymes present are cell bound as well as intacellular in nature. The molecular weight of various yeast lipases reported is between ~33 to ~65 kD. Nucleotide sequence homology study of various cloned lipases from yeasts suggest that they lipase isozymes are produced by different genes. Post transcriptional and post translational modifications do also contribute towards production of various isoenzymes. In two widely studied lipase producing yeasts Candida rugosanadGeotrichumcandidum the lipase genes have been located on the same chromosome. These results have led to the presumption, that the various lipase encoding genes have perhaps resulted from gene duplication. More than 50% of yeasts produce lipases isozymes encoded by different genes constituting the lipase gene families. Like many other organisms including mammals presence of lipase gene families is quite prevalent in yeasts and at present Candida albicans leads with 11 lipase encoding genes. Members of various lipase gene families have been tabulated in Table 5.
Compared to enormous potential lipases in general and yeast lipases in particular, their actual use in biotechnology industry at present is almost negligible. Hydrolysis of fats and oils is still being carried out by the conventional emulsion system and not with the use of lipases. The technology has not advanced to provide substitutes of the conventional chemical process. However one yeast enzyme, CCL is being used for splitting oil and use of fatty acids produced for production of soaps (Reetze and Schimossek, 1996; Saxena et al. 1999). Introduction of new generation thermostable yeast lipases can tilt economic balance in favour of lipases. Novel lipases can also be used for the synthesis of whole range of amphoteric biodegradable surfactants namely amino acid based ester amides. The prospects of industrial application of lipases are bright. However it calls for discovering novel lipases by extensive screening and transformation of the known ones by genetic manipulations. Greater understanding of all aspects of lipase production and upstream, downstream processing of factors effecting lipase activity and stability. The mechanism by which these factors influence the three-dimensional structure of lipases and their ability to catalyse. Factors such as immobilization and the nature of organic solvents used also affect the catalytic efficiency of lipase. Thorough understanding of the factors can help in the development of tailor made lipases for specific application and in long run open up new vistas.
Biotech industry can be classified into three groups, which are listed below.
1. Industries producing high volume, and low value products e.g. ethanol, high fructose syrup.
2. Those making high volume and moderate value commodities e.g. organic acids, amino acids, food products polymers.
3. Industries manufacturing low volume, high value products e.g. pharmaceuticals, vitamins, enzymes etc.
Whatever be the volume or value of the product of industry most of these are used for consumption. It is not necessary to emphasize that use of yeasts in manufacture of consumable items is safe. In fact yeast has been used since ages in manufacture of food products like cheese, yogurt, curd, bread etc. and are considered natural.
Dozen of lipases including yeast lipases are now commercially available nevertheless those employed in large - scale industrial process and products are still limited to few cases. This is mainly due to high price/ low availability or non-optimal operational features of naturally available enzymes. Perspectives in the use of lipases as industrial catalysts strongly rely on the production of recombinant enzymes with biochemical and catalytic features improved by protein engineering methods.
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