Molecular Biology

Electronic Journal of Biotechnology ISSN: 0717-3458 Vol. 9 No. 3, Special Issue, 2006
© 2006 by Pontificia Universidad Católica de Valparaíso -- Chile  
DOI: 10.2225/vol9-issue3-fulltext-15  

Analysis and sequencing of h6hmRNA, last enzyme in the tropane alkaloids pathway from anthers and hairy root cultures of Brugmansia candida (Solanaceae)

Alejandra B. Cardillo
Departamento Microbiología, Inmunología y Biotecnología
Facultad de Farmacia y Bioquímica
Universidad de Buenos Aires
Junin 956 (1113)
Buenos Aires, Argentina
Tel: 54 11 4964 8270

Ana M. Giulietti
Departamento Microbiología, Inmunología y Biotecnología
Facultad de Farmacia y Bioquímica
Universidad de Buenos Aires
Junin 956 (1113)
Buenos Aires, Argentina
Tel: 54 11 4964 8270

Patricia L. Marconi*
Fundación Pablo Cassará
Centro de Ciencia y Tecnología Dr. Cesar Milstein
Saladillo 2452 (C1144FFX)
Buenos Aires, Argentina
Tel: 54 11 4687 3663
Fax: 054 11 4687 4065

*Corresponding author

Financial support: BID 1201 OC-AR/PICT 12178 and CONICET.

Keywords: H6H, hairy roots, hyoscyamine, scopolamine, sequence analysis, transformation.


B5: Gamborg medium
H6H : Hyoscyamine 6-
β hydroxylase
HR: hairy roots
NaClO: sodium hypochlorite
PCR: polymerase chain reaction
RT-PCR: reverse-transcription polymerase chain reaction

Abstract   Reprint (PDF)

Brugmansia candida (Solanaceae) is a native tree distributed across South-American and produces the pharmacologically- important group of tropane alkaloids including scopolamine. This biocompound is synthesised from hyoscyamine by action of Hyoscyamine 6-β hydroxylase (H6H, EC at the end of the tropane alkaloid pathway. Here are reported the tissue and organ-specific expression of h6hmRNA by RT-PCR analyses and the isolation, cloning and sequencing of the cDNA obtained from B. candida anthers and hairy root transformed cultures. Bioinformatic analysis of the nucleotide sequence revealed an uninterrupted ORF of 1038 bp and the predicted aminoacid sequence could be 344 aminoacid long. A database search showed that this sequence has high homology (97% identity) to Hyoscyamus niger H6H protein (Genbank accession number AAA33387.1).

Materials and Methods
  • Plant material
  • Hairy root cultures
  • RT-PCR and PCR analysis
  • Primer design
  • PCR cycle parameters
  • Cloning in the pCR2.1-TOPO vector
  • Automated sequencing
    Results and Discussion
    Figure 1
    Figure 2
    Figure 3

    Brugmansia candida is a South-American native tree that belongs to the Solanaceae family. Previous reports found that this plant is a high tropane alkaloid producer. Hyoscyamine and scopolamine are the most relevant tropane alkaloids widely used due to their effects on parasimpathic nervous system. These alkaloids can not be substituted by any other class of compounds and therefore their demand continues. Hyoscyamine 6-β hydroxylase (H6H, EC catalyses hydroxylation of hyoscyamine leading to 6,7-β-epoxide of hyoscyamine (scopolamine) at the end of the tropane alkaloid pathway. This enzyme has been isolated and the corresponding gene cloned from Hyoscyamus niger and Atropa belladonna plants (Rocha et al. 2002; Hashimoto and Yamada, 2003). Also, Hashimoto and Yamada (2003) localized the H6H protein at the pericycle of the root. In a previous work, Matsuda et al. (1991) demonstrated that h6h mRNA is abundant in cultured roots (hairy root), plant roots; but it is absent in stems, leaves and cultured cells.

    The present work reports the tissue and organ-specific expression of h6hmRNA by RT-PCR analyses and the isolation, cloning and sequencing of the messenger obtained from B. candida anthers and hairy root cultures.

    Materials and Methods

    Plant material

    Different organs: root tips; apical stem and leaves and seeds were harvested from plants that grew at the “Jardín Botánico” of Buenos Aires (Argentina). Although, anthers with pollen at the mother cells statge of inmature close flowers were analysed from the same plants.

    Hairy root cultures

    Seeds were surface sterilized by immersion in NaClO (4%) for 30 min, and rinsed three times with sterile distilled water. Thereafter, seeds were placed on B5/2 medium (hormone-free, half-stregth Gamborg B5 medium) supplemented with sucrose 15 g/l and agar 8 g/l. Incubation was carried out at 24ºC ± 2ºC with a 16 hrs photoperiod.

    Hairy root (HR) cultures of B. candida were obtained from 3-4 weeks old seedlings after infection with Agrobacterium rhizogenes strain LBA 9402. The HR growth at the infection sites were excised and cultured individually on B5/2 liquid medium supplemented with sucrose 15 g/l, ampicillin 2 g/l and agar 8 g/l. The resulting HR were incubated on a gyratory shaker at 100 rpm in the same conditions described above. The HR were routinely sub-cultured every 2 weeks reducing 1:10 the concentration of antibiotics until the elimination of Agrobacterium. Transformation event was confirmed according to methods described previously (Pitta Alvarez et al. 2003).

    RT-PCR and PCR analysis

    Total RNA was isolated from organs and HR mentioned above with Trizol-Reagent and compared to the extraction with RNeasy Plant Kit (Qiagen). Integrity and size distribution of purified total RNA were checked by gel electrophoresis on denaturing conditions. The cDNA synthesis was performed using Superscript II reverse Transcriptase (Life Technologies).

    Primer design

    Specific primers were designed based on the sequence of the h6h gene from Hyoscyamus niger (Genbank, M62719). The resulting primers were: 5’ATGGCTACTTTTGTGTCG3’ and 5’CACTCTAGACATATGAGT 3’.

    PCR cycle parameters

    Melting step: 94ºC for 4 min, annealing step: 40ºC for 1 min, elongation step: 72ºC for 3 min. At termination of 30 cycles, there was a further, final elongation step of 72ºC for 7 min.

    Cloning in the pCR2.1-TOPO vector

    Agarose gel electrophoresis was performed as described by Sambrook et al. (1989). The amplified fragments of the expected size were isolated from agarose gel and purified using the GFX columns (Amersham). They were cloned in the TOPO vector according to the manufacturer instructions (Invitrogen).

    Escherichia coli strain DH5α was transformed with the construction obtained by chemical transformation. Positive clones obtained from screening were analyzed by restriction mapping and confirmed by sequencing.

    Automated sequencing

    The samples were sequenced by the DNA ABI 373A automated sequencer, based on the Sanger method. The results were analysed by bioinformatics tools.

    Results and Discussion

    The induction of HR from B. candida plants using de A. rhizogenes LBA9402 was successfully obtained with a frequency of transformation around 80%. This is according to previous experiments done with this plant material (Pitta Alvarez et al. 2003). The transformation process was checked by PCR reaction (data not shown).

    The root tips were isolated from roots growing into de soil. Shoot, leaves, anther were obtained from the same plants.

    Different preparations of total RNA were obtained from 3 weeks-old HR cultures and from different tissues and organs of flowering plants.

    Concerning to RNA isolation, the RNeasy Plant Mini Kit allowed us to obtain higher total RNA levels comparing to Trizol procedure. The results are shown with anthers due to the stronger specific signal obtained with this organ. Also, the integrity and size distribution of total RNA were checked by denaturing agarose gel electrophoresis as described in Materials and Methods. The ribosomal RNA appeared as sharp bands when Total RNA was extracted using the RNeasy Kit (Figure 1). Also, the 28S ribosomal RNA band presented an intensity of approximately twice that of the 18S RNA band (Figure 1).

    In contrast, the ribosomal bands in Trizol methodology were not sharp and appeared smaller sized RNA bands. In this case, the RNA sample suffered major degradation during preparation (Figure 1).

    The relative abundance of h6hmRNA was determined by RT-PCR in root tips, stem, leaves, anthers and HR cultures. No signal was detected in apical shoot and leave samples from flowering plants. HR and root tips samples showed a weakly signal. However, anthers showed the strongest signal.

    Reverse transcription was carried out using an oligo-dT primer which allowed detection of multiple species of cDNAs from the total RNA. The RT reaction was amplified by PCR and appropriate specific primers to evaluate the h6hmRNA presence. The primers were designed using the known sequence of the Hyoscyamus niger h6h gene due to the homology founded among the members of the Solanaceae family (Genbank, M62719). In Figure 2 are shown the PCR amplification products that have an estimated molecular mass of 1 Kb.

    Amplified PCR product was cloned using the TOPOVector Technology. EcoRI restriction mapping performed on positive clones showed the release of 1 Kb fragment as expected (data not shown).

    The 1Kb PCR product was sequenced (Figure 3). Furthermore, using the sequence information, internal primers were designed in order to confirm H6H sequence.

    The bioinformatic analysis revealed an uninterrupted ORF of 1038 bp. The predicted aminoacid sequence is 344 aminoacids long. A database search showed that this sequence has high homology (97% identity) to H. niger H6H protein (Genbank accession number AAA33387.1) (Figure 3). These results are coincident to previous reports about the H6H from other related species (Matsuda et al. 1991). Also, the 2OG-Fe(II) oxygenase superfamily domain is conserved in the h6h gene from B. candida. In addition, the analysis shows that the h6h sequence has similarity to other hydroxylases including those involved in the formation of ethylene (locus AAA85365 Picea glauca, NP_914944 and XP_476309 Oryza sativa; AAM65315 Arabidopsis thaliana), and anthocyanins (locus BAD29052 Oryza sativa).

    Using RT-PCR methodology combined with specific primer design has led to obtain a rapid cloning method. The expression of h6h gene was investigated by RT-PCR in different organs and tissues from flowering plants and HR cultures. Total RNA extracted was analyzed but the different degrees of variation observed in the expression of H6H among samples could not be explained (Brunner et al. 2004). It should also be remembered that B. candida is a self-fertile natural hybrid which will presumably increase the potential range for variation among the population (Giulietti et al. 1993). The highest concentration of h6hmRNA was identified in anther samples but these aspects need to be investigated in further experiments.


    BRUNNER, A.; YAKOVLEV, I. and STRAUSS, S. Validating internal controls for quantitative plant gene expression studies. BMC Plant Biology, August 2004, vol. 4, p. 14-21. [CrossRef]

    GIULIETTI, A.M.; PARR, A. and RHODES, M.J.C. Tropane alkaloid production in transformed root cultures of Brugmansia candida. Planta Medica, 1993, vol. 59, no. 5, p. 428-431.

    HASHIMOTO, T. and YAMADA, Y. New genes in alkaloid metabolism and transport. Current Opinion in Biotechnology, 2003, vol. 14, no. 2, p. 163-168. [CrossRef]

    MATSUDA, J.; OKABE, S.; HASHIMOTO, T. and YAMADA, Y. Molecular cloning of hyoscyamine 6 beta-hydroxylase, a 2-oxoglutarate- dependent dioxygenase, from cultured roots of Hyoscyamus niger. Journal of Biological Chemistry, 1991, vol. 266, no. 15, p. 9460-9464.

    PITTA ALVAREZ, S.A.; MARCONI, P.L. and GIULIETTI, A.M. Comparison of the influence of different elicitors on hyoscyamine and scopolamine content in hairy root cultures of Brugmansia candida. In vitro Cellular and Developmental Biology- Plant, 2003, vol. 39, no. 6, p. 640-644. [CrossRef]

    ROCHA, P.; STENZEL, O.; PARR, A.; WALTON, N. and LEECH, M.J. Functional expression of tropinone reductase I (trI) and hyoscyamine-6β-hydroxylase (h6h) from Hyoscyamus niger in Nicotiana tabacum. Plant Science, 2002, vol. 162, no. 6, p. 905-913. [CrossRef]

    SAMBROOK, J.; FRITSCH, E.F. and MANIATIS, T. Molecular cloning: a laboratory manual. 3rd ed., 2001. Cold Spring Harbor Laboratory Press. New York, USA. 1.1-7. 94 p. ISBN 087969-576-5.

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